Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23e06
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 29 0.98
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 27 3.0
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 5.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.9
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.2
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 9.2
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 25 9.2
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 9.2
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 9.2
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 28.7 bits (61), Expect = 0.98
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 520 HSNLSTKRRKTEIENSTDRNVRLXXXXXXXXXXXXPGEHFEDYRPVFN--DNDEDQEENA 693
H+N ++ T + NS +R +R E D+ V + ++DE +EE
Sbjct: 255 HNNGYLRKCLTFVPNSPERCIRCLQFIKPYISSLDATEDDVDFTEVDDIPEDDELEEEEP 314
Query: 694 LRPSFQNSDTKFNQSVNDM 750
L PS + D F Q + D+
Sbjct: 315 LLPSKEEFDASFLQPLADV 333
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 3.0
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Frame = +1
Query: 436 SNTYGASSTTSHGSAIQSEDEPDTANEYHSNLSTKRRKTEIENSTDRNVRLXXXXXXXXX 615
S T +++ T ++ SE + + + +N ST+R++ E+E S D ++
Sbjct: 110 SKTVPSNAITQSDNSQISESKSTSQSAVTTN-STRRKEKELEASKDGKIKPSSSNTRYPA 168
Query: 616 XXXPGEHFEDYRPVFND-NDE-DQEENALRPSFQNSDTKFNQSVNDMNDP 759
G P+ D NDE D E L + + F+Q N ++DP
Sbjct: 169 ISSKG-------PITTDTNDEPDMEVMELDDFAKELELGFDQEFNSIDDP 211
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 478 AIQSEDEPDTANEYHSNLSTKRRKTE 555
A S+D D++N+ +S +S KRRKTE
Sbjct: 118 ASDSDDSVDSSNK-NSEVSIKRRKTE 142
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 482 YNQKMNLIQQMNIIQTSVQN 541
+NQ+MN ++ NII+T+ +N
Sbjct: 1150 WNQRMNALKVKNIIETNYEN 1169
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 9.2
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Frame = -1
Query: 566 LFSISVFLRFVLRFE*YSFAVSGSSSDCIADPCDV-----VEDAPYVLLLEHFAGFL--- 411
L + FLRF+ F F++SGS + I D V DAP V E FA L
Sbjct: 1115 LLPVCCFLRFMYYFLPTVFSLSGSYWNSIFDYIKYAMKMSVVDAPIVKSFELFALRLYNA 1174
Query: 410 LSSLLEPSSDVSE 372
LS E +SD+ +
Sbjct: 1175 LSKNYEMNSDIKD 1187
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 454 SSTTSHGSAIQSEDEPDTANEYHSNLSTKRRK 549
SS+ G ++SEDE N HS + T K
Sbjct: 78 SSSPIAGIIVESEDEEVVENNLHSQMGTSCNK 109
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 172 FYRSILLAFLE*LFPHFLLISIKGYIAITFLTCAC*FYYFGLQYFAVCRL 23
F + + + F +P ++G I + + F Y+GL +FAV RL
Sbjct: 314 FVQGLFVTFAPLSYPVMSFYGVRG-ILLKLIWNIYTFVYYGLPFFAVYRL 362
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -2
Query: 250 IS*TPVSKIKSYISDHNANSNPMLFKFYRSILLAFLE*LFPHFLLISIKG 101
IS +S + I+++N N +LFK + +L A + +F +S+KG
Sbjct: 1219 ISPLMLSTLDMIIAENNVNEVSVLFKSFLELLAADEDLIFEADQKLSLKG 1268
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 9.2
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Frame = +1
Query: 433 RSNTYGASSTTSHGSAIQSEDEPDT------ANEYHSNLSTKRRKTEIENSTDRNVRLXX 594
++ T A T +H +Q + E D AN Y+S+ +RRKT N+ RN
Sbjct: 69 QAETSYAYDTAAHDDPVQRQLEEDERCARELANRYNSHRPERRRKT---NNDRRNYPPQN 125
Query: 595 XXXXXXXXXXPG-EHFEDYRPVFNDNDEDQEENALRPSF---QNSDTKFNQSVNDMNDPE 762
FED PV D ++ + S +N +KF+ D +D +
Sbjct: 126 RTAKPNDNDGDDYSFFEDDLPVIKDTFMRGFQSFKQRSMEWVENIASKFDGEEEDDDDEK 185
Query: 763 YA 768
Y+
Sbjct: 186 YS 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,312
Number of Sequences: 5004
Number of extensions: 59110
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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