Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e06
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906...    30   2.4  
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    29   3.1  
04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346...    29   5.4  
03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898           29   5.4  
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591     28   7.2  
09_02_0555 - 10588685-10592038                                         28   7.2  
03_05_0186 + 21731294-21732277                                         28   7.2  
01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562...    28   9.5  

>02_02_0335 +
           9063749-9064216,9064846-9064890,9065351-9065470,
           9066025-9067527
          Length = 711

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 469 HGSAIQSEDEPDTANEYHSNLSTKRRKTEIENS 567
           HGS+IQ  D       Y  N+   +R+TE  +S
Sbjct: 512 HGSSIQMHDHTGPRRSYTGNMDAPKRRTEYSHS 544


>09_04_0594 -
           18831011-18831360,18831562-18832111,18832364-18833406,
           18833496-18833760,18835194-18835340,18835431-18835511,
           18835626-18835804,18835935-18836093,18836269-18836398,
           18836935-18837094,18837337-18837419,18837865-18837915,
           18838035-18838151,18838273-18838359
          Length = 1133

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 718 QNFESLVVMRSPLGLHRCH*IQDGNLQSVRRAT 620
           +N ESL    +P+ LH CH    G+ Q  +RAT
Sbjct: 815 ENAESLPDFSTPVHLHDCHQAAFGDFQGSQRAT 847


>04_04_0027 +
           22232781-22233051,22234256-22234329,22234471-22234638,
           22234812-22234971,22235062-22235145,22235781-22236078,
           22236158-22236364,22236465-22236735,22236971-22237055,
           22237141-22237182,22237302-22237350,22237825-22237894,
           22238314-22238463,22238592-22238619,22238856-22238990,
           22240693-22241469,22242133-22242192,22242367-22242413
          Length = 991

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 448 GASSTTSHGSAIQSEDEPDTANEYHSNLSTKRRKTEIENSTD 573
           GA   T     I ++ E DTA E       K++KT+ +N ++
Sbjct: 410 GAHQNTDKTKHIHTDAEEDTAQEASKKKKNKKKKTQEKNESE 451


>03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898
          Length = 247

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 404 KKAENQRSAR-EAIHMVHLQLHHMDLQYNQKMNLIQQ 511
           KKA   R AR + +H   LQ      QY   +NL+QQ
Sbjct: 114 KKARPSRRARAQLLHQYQLQQQQQHRQYLHSLNLLQQ 150


>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
          Length = 573

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 306 KSILKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIG 163
           + + +ELG+  LNF   T YH     +++ + QI   IL LC L+F G
Sbjct: 340 QKLQEELGTR-LNFS--TAYHPQTDGQTERVNQILEDILRLCALDFGG 384


>09_02_0555 - 10588685-10592038
          Length = 1117

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 306 KSILKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNF 169
           K + +ELG+  LNF   T YH     +++ ++QI   +L  C L+F
Sbjct: 834 KKLQEELGTR-LNFS--TAYHPQTDGQTERLYQILEDMLRACVLDF 876


>03_05_0186 + 21731294-21732277
          Length = 327

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 306 KSILKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIG 163
           K +L+E+ S  LNF   T+YH     +++ + QI   +L  C L+F G
Sbjct: 130 KKLLEEMASK-LNFS--TSYHPQTDGQTERVNQILEDMLRACVLDFDG 174


>01_05_0714 +
           24555494-24555637,24555884-24556071,24556195-24556280,
           24556359-24556461,24556798-24557000,24557077-24557681,
           24557784-24557918,24558040-24558067,24559517-24559596,
           24559873-24559975,24560553-24560635,24560915-24561017,
           24561596-24561720,24562001-24562103,24562647-24562726,
           24563322-24563429,24563521-24563565
          Length = 773

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 658 FNDNDEDQEENALRPSFQNSDTKFNQ-SVNDMNDP 759
           F D DED+EEN LR + Q  +    +  + D N P
Sbjct: 260 FKDLDEDEEENLLRKTLQIKEISIGKVCLPDFNVP 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,872,240
Number of Sequences: 37544
Number of extensions: 321328
Number of successful extensions: 806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)