Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23e06
(776 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY017378-1|AAG54076.1| 1025|Homo sapiens RNA helicase-DEAD box p... 39 0.023
BC111750-1|AAI11751.1| 1025|Homo sapiens interferon induced with... 38 0.053
BC078180-1|AAH78180.1| 772|Homo sapiens IFIH1 protein protein. 38 0.053
AC007750-3|AAY24206.1| 589|Homo sapiens unknown protein. 38 0.053
AF095844-1|AAG34368.1| 1025|Homo sapiens melanoma differentiatio... 37 0.070
BX649449-3|CAH71689.1| 476|Homo sapiens PRAME family member 5 p... 35 0.28
BC130276-1|AAI30277.1| 476|Homo sapiens PRAME family member 5 p... 35 0.28
BC130274-1|AAI30275.1| 476|Homo sapiens PRAME family member 5 p... 35 0.28
BC101344-1|AAI01345.1| 476|Homo sapiens PRAME family member 5 p... 35 0.28
BC101342-1|AAI01343.1| 476|Homo sapiens PRAME family member 6 p... 35 0.28
AL358783-3|CAH73924.1| 476|Homo sapiens PRAME family member 6 p... 35 0.28
AK056293-1|BAB71141.1| 468|Homo sapiens protein ( Homo sapiens ... 35 0.38
>AY017378-1|AAG54076.1| 1025|Homo sapiens RNA helicase-DEAD box
protein RH116 protein.
Length = 1025
Score = 38.7 bits (86), Expect = 0.023
Identities = 29/98 (29%), Positives = 47/98 (47%)
Frame = +2
Query: 284 PNSFKILFTIT*YSYYCSINHIPAAS**TSQIHQMKVPAVKKAENQRSAREAIHMVHLQL 463
P K+L +T YC ++ P + T Q + KKA + + +E++ HL+
Sbjct: 549 PFKEKLLEIMTRIQTYCQMS--PMSDFGTQPYEQWAIQMEKKAAKEGNRKESVCAEHLRK 606
Query: 464 HHMDLQYNQKMNLIQQMNIIQTSVQNEEKPK*KIAQIE 577
++ LQ N + +I ++T NEEK K K A IE
Sbjct: 607 YNKALQINDTIRMIDAYTHLET-FYNEEKDK-KFAVIE 642
>BC111750-1|AAI11751.1| 1025|Homo sapiens interferon induced with
helicase C domain 1 protein.
Length = 1025
Score = 37.5 bits (83), Expect = 0.053
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 284 PNSFKILFTIT*YSYYCSINHIPAAS**TSQIHQMKVPAVKKAENQRSAREAIHMVHLQL 463
P K+L +T YC ++ P + T Q + KKA + + +E + HL+
Sbjct: 549 PFKEKLLEIMTRIQTYCQMS--PMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRK 606
Query: 464 HHMDLQYNQKMNLIQQMNIIQTSVQNEEKPK*KIAQIE 577
++ LQ N + +I ++T NEEK K K A IE
Sbjct: 607 YNEALQINDTIRMIDAYTHLET-FYNEEKDK-KFAVIE 642
>BC078180-1|AAH78180.1| 772|Homo sapiens IFIH1 protein protein.
Length = 772
Score = 37.5 bits (83), Expect = 0.053
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 284 PNSFKILFTIT*YSYYCSINHIPAAS**TSQIHQMKVPAVKKAENQRSAREAIHMVHLQL 463
P K+L +T YC ++ P + T Q + KKA + + +E + HL+
Sbjct: 549 PFKEKLLEIMTRIQTYCQMS--PMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRK 606
Query: 464 HHMDLQYNQKMNLIQQMNIIQTSVQNEEKPK*KIAQIE 577
++ LQ N + +I ++T NEEK K K A IE
Sbjct: 607 YNEALQINDTIRMIDAYTHLET-FYNEEKDK-KFAVIE 642
>AC007750-3|AAY24206.1| 589|Homo sapiens unknown protein.
Length = 589
Score = 37.5 bits (83), Expect = 0.053
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 284 PNSFKILFTIT*YSYYCSINHIPAAS**TSQIHQMKVPAVKKAENQRSAREAIHMVHLQL 463
P K+L +T YC ++ P + T Q + KKA + + +E + HL+
Sbjct: 113 PFKEKLLEIMTRIQTYCQMS--PMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRK 170
Query: 464 HHMDLQYNQKMNLIQQMNIIQTSVQNEEKPK*KIAQIE 577
++ LQ N + +I ++T NEEK K K A IE
Sbjct: 171 YNEALQINDTIRMIDAYTHLET-FYNEEKDK-KFAVIE 206
>AF095844-1|AAG34368.1| 1025|Homo sapiens melanoma differentiation
associated protein-5 protein.
Length = 1025
Score = 37.1 bits (82), Expect = 0.070
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 284 PNSFKILFTIT*YSYYCSINHIPAAS**TSQIHQMKVPAVKKAENQRSAREAIHMVHLQL 463
P K+L +T YC ++ P + T Q + KKA + + +E + HL+
Sbjct: 549 PFKEKLLEIMTRIQTYCQMS--PMSDFGTQPYEQWAIQMEKKAAKKGNRKERVCAEHLRK 606
Query: 464 HHMDLQYNQKMNLIQQMNIIQTSVQNEEKPK*KIAQIE 577
++ LQ N + +I ++T NEEK K K A IE
Sbjct: 607 YNEALQINDTIRMIDAYTHLET-FYNEEKDK-KFAVIE 642
>BX649449-3|CAH71689.1| 476|Homo sapiens PRAME family member 5
protein.
Length = 476
Score = 35.1 bits (77), Expect = 0.28
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 297 LKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIGQSSLHFLNSYFH--I 124
++ L L L+ M + Y K +++ Q TTQ L LC L + +S+ FL + +
Sbjct: 231 MRNLQKLVLSHMDVSRYVSPEQ-KKEIVTQFTTQFLKLCCLQKLSMNSVSFLEGHLDQLL 289
Query: 123 SCL 115
SCL
Sbjct: 290 SCL 292
>BC130276-1|AAI30277.1| 476|Homo sapiens PRAME family member 5
protein.
Length = 476
Score = 35.1 bits (77), Expect = 0.28
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 297 LKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIGQSSLHFLNSYFH--I 124
++ L L L+ M + Y K +++ Q TTQ L LC L + +S+ FL + +
Sbjct: 231 MRNLQKLVLSHMDVSRYVSPEQ-KKEIVTQFTTQFLKLCCLQKLSMNSVSFLEGHLDQLL 289
Query: 123 SCL 115
SCL
Sbjct: 290 SCL 292
>BC130274-1|AAI30275.1| 476|Homo sapiens PRAME family member 5
protein.
Length = 476
Score = 35.1 bits (77), Expect = 0.28
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 297 LKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIGQSSLHFLNSYFH--I 124
++ L L L+ M + Y K +++ Q TTQ L LC L + +S+ FL + +
Sbjct: 231 MRNLQKLVLSHMDVSRYVSPEQ-KKEIVTQFTTQFLKLCCLQKLSMNSVSFLEGHLDQLL 289
Query: 123 SCL 115
SCL
Sbjct: 290 SCL 292
>BC101344-1|AAI01345.1| 476|Homo sapiens PRAME family member 5
protein.
Length = 476
Score = 35.1 bits (77), Expect = 0.28
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 297 LKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIGQSSLHFLNSYFH--I 124
++ L L L+ M + Y K +++ Q TTQ L LC L + +S+ FL + +
Sbjct: 231 MRNLQKLVLSHMDVSRYVSPEQ-KKEIVTQFTTQFLKLCCLQKLSMNSVSFLEGHLDQLL 289
Query: 123 SCL 115
SCL
Sbjct: 290 SCL 292
>BC101342-1|AAI01343.1| 476|Homo sapiens PRAME family member 6
protein.
Length = 476
Score = 35.1 bits (77), Expect = 0.28
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 297 LKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIGQSSLHFLNSYFH--I 124
++ L L L+ M + Y K +++ Q TTQ L LC L + +S+ FL + +
Sbjct: 231 MRNLQKLVLSHMDVSRYVSPEQ-KKEIVTQFTTQFLKLCCLQKLSMNSVSFLEGHLDQLL 289
Query: 123 SCL 115
SCL
Sbjct: 290 SCL 292
>AL358783-3|CAH73924.1| 476|Homo sapiens PRAME family member 6
protein.
Length = 476
Score = 35.1 bits (77), Expect = 0.28
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 297 LKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIGQSSLHFLNSYFH--I 124
++ L L L+ M + Y K +++ Q TTQ L LC L + +S+ FL + +
Sbjct: 231 MRNLQKLVLSHMDVSRYVSPEQ-KKEIVTQFTTQFLKLCCLQKLSMNSVSFLEGHLDQLL 289
Query: 123 SCL 115
SCL
Sbjct: 290 SCL 292
>AK056293-1|BAB71141.1| 468|Homo sapiens protein ( Homo sapiens
cDNA FLJ31731 fis, clone NT2RI2006855, weakly similar to
Homo sapiens RNA helicase (RIG-I) mRNA. ).
Length = 468
Score = 34.7 bits (76), Expect = 0.38
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = +2
Query: 329 YCSINHIPAAS**TSQIHQMKVPAVKKAENQRSAREAIHMVHLQLHHMDLQYNQKMNLIQ 508
YC ++ P + T Q + KKA + + +E + HL+ ++ LQ N + +I
Sbjct: 7 YCQMS--PMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 64
Query: 509 QMNIIQTSVQNEEKPK*KIAQIE 577
++T NEEK K K A IE
Sbjct: 65 AYTHLET-FYNEEKDK-KFAVIE 85
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,832,135
Number of Sequences: 237096
Number of extensions: 1838895
Number of successful extensions: 7824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7821
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -