Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e06
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.79 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.2  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   5.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   7.3  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   7.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   7.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 515 SFAVSGSSSDCIADPCDVVEDAPYVLLLEHFAGF 414
           S ++S S  +    P   +EDAP   LL +F G+
Sbjct: 375 SSSISSSEENDFWQPKPTLEDAPQNSLLPNFVGY 408


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 667 NDEDQEENALRPSFQNSD 720
           +D D+EE + RPSF+  D
Sbjct: 41  DDSDEEELSARPSFKTFD 58


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 137 VISTFLA--YKHKRVHSHNIFNLCMLVLLFW 51
           V+ST L   Y H+   +H +     +V L+W
Sbjct: 309 VVSTILILNYHHRNADTHEMSEWVKVVFLYW 339


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 412 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 498
           R P    RSNT   S T      ++S D+
Sbjct: 83  RSPGSRDRSNTSNTSKTVILSDKLESSDD 111


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 412 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 498
           R P    RSNT   S T    + ++S D+
Sbjct: 83  RSPDSRDRSNTSNTSKTVILSNKLESSDD 111


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 443 HMVHLQLHHMDLQYNQKMNLIQQMNI 520
           H +H Q  HM  Q  Q  +  QQ ++
Sbjct: 170 HQMHTQHPHMQPQQGQHQSQAQQQHL 195



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/38 (26%), Positives = 13/38 (34%)
 Frame = +2

Query: 380 HQMKVPAVKKAENQRSAREAIHMVHLQLHHMDLQYNQK 493
           HQM          Q   +      HLQ H   + Y Q+
Sbjct: 170 HQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQ 207


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 653 LYLMTTMKTKRRTHYDQAFKILI 721
           L   TT+    RTHYD   +I+I
Sbjct: 34  LITSTTLNWLPRTHYDHLKEIVI 56


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 412 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 498
           R P    RSNT   S T      ++S D+
Sbjct: 83  RSPDSRDRSNTSNTSKTVILSDKLESSDD 111


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 412 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 498
           R P    RSNT   S T      ++S D+
Sbjct: 83  RSPDSRDRSNTSNTSKTVILSDKLESSDD 111


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 412 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 498
           R P    RSNT   S T    + ++S D+
Sbjct: 83  RSPDSRDRSNTSNTSKTIILSNKLESSDD 111


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 412 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 498
           R P    RSNT   S T      ++S D+
Sbjct: 83  RSPDSRDRSNTSNTSKTVILSDKLESSDD 111


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 476 LQYNQKMNLIQQMNIIQTS 532
           LQ   ++N+IQQ +++QT+
Sbjct: 149 LQEQLQLNVIQQTHLLQTA 167


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 412 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 498
           R P    RSNT   S T      ++S D+
Sbjct: 83  RSPDSRDRSNTSNISKTVILSDKLESSDD 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,925
Number of Sequences: 438
Number of extensions: 3930
Number of successful extensions: 22
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)