Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e05
         (448 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    27   0.061
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.43 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.43 
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   3.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.0  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   4.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   5.3  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   7.0  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   7.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   9.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   9.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   9.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   9.3  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 0.061
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 236 LKVRCVAMAIVWPLWC 283
           LK R +  A +WPLWC
Sbjct: 560 LKSRGIRTAAIWPLWC 575


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 118 PTPSYIDPGLFFAQPGILC 62
           P PS IDPG      G LC
Sbjct: 153 PNPSIIDPGPALPPAGFLC 171


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 118 PTPSYIDPGLFFAQPGILC 62
           P PS IDPG      G LC
Sbjct: 153 PNPSIIDPGPALPPTGFLC 171


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 447 IIKFGIYLYTIFLVILVVI 391
           II   +++YT+  VIL+++
Sbjct: 212 IIHLSVFVYTLVSVILIIM 230


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 304 NTDXEVLESLEYTSDNVELLC 366
           +TD +VL    ++  NV LLC
Sbjct: 234 STDIKVLGYQRHSKQNVALLC 254


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 434 VFIYTQFFW*YLL*LSTITHTFLH-NNSTLSLVY 336
           +FI  + F+  LL +S   +  LH NN+T   +Y
Sbjct: 132 IFITCELFFVILLWISFFLNFMLHCNNTTWRCLY 165


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 236 LKVRCVAMAIVWPLWC 283
           L  R +    +WP+WC
Sbjct: 607 LVARGLGAEAMWPVWC 622


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 353 TLSLVYSKLSNTSXSVFCS*FRSNTTTAKQSPLQHIA 243
           ++ +V+S ++NT+  V     R  T +   + L H+A
Sbjct: 60  SILMVFSAIANTTVLVLIVKRRRKTPSRINTMLMHLA 96


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 353 TLSLVYSKLSNTSXSVFCS*FRSNTTTAKQSPLQHIA 243
           ++ +V+S ++NT+  V     R  T +   + L H+A
Sbjct: 60  SILMVFSAIANTTVLVLIVKRRRKTPSRINTMLMHLA 96


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 103 IDPGLFFAQPGILCVTPHXSHSIKTIML 20
           I P LFF  P ++ +    SH    I L
Sbjct: 441 IPPYLFFESPPVVFLNDFISHQHAWIWL 468


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 103 IDPGLFFAQPGILCVTPHXSHSIKTIML 20
           I P LFF  P ++ +    SH    I L
Sbjct: 441 IPPYLFFESPPVVFLNDFISHQHAWIWL 468


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 103 IDPGLFFAQPGILCVTPHXSHSIKTIML 20
           I P LFF  P ++ +    SH    I L
Sbjct: 441 IPPYLFFESPPVVFLNDFISHQHAWIWL 468


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 103 IDPGLFFAQPGILCVTPHXSHSIKTIML 20
           I P LFF  P ++ +    SH    I L
Sbjct: 441 IPPYLFFESPPVVFLNDFISHQHAWIWL 468


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,596
Number of Sequences: 336
Number of extensions: 2569
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)