Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e05
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   2.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.0  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   4.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   5.3  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   7.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   7.0  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    24   9.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    24   9.3  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 241  GAMCC----NGDCLAVVVLDRNQLQNTDXEVLESLEYTSDNVELLCKKVCV 381
            G  CC    NG  L    L R   +N+D  +L S  YT  N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 392  LSTITHTFLHNNSTLSLVYSKLSNTSXSVFC 300
            L T+THT  HN   L    S L  T   ++C
Sbjct: 4029 LPTMTHTLPHNRFRLFFFLSWLHATLAEIYC 4059


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 320 CWKV*NTLVTTLNCYAKKY 376
           CWK   T+V  L  Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 325 ESLEYTSDNVELLCKKVCVIVDNYNKYYQKN 417
           +S+EY  +N++ +  K+  +VD  N YY  +
Sbjct: 229 DSVEYV-ENIQYIDGKIQELVDKMNNYYNND 258


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 283 LDRNQLQNTDXEVLESLEYTSDNVE 357
           +D N  +++D +    LEYT+DN E
Sbjct: 8   IDPNSSEDSDIQEDAELEYTADNPE 32


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 130 FNIMHLTA-NVLLVPNALXKRDVKYIYNTYLKNYSVIE 240
           +N++  TA NV+     + + +++Y  N + K Y +IE
Sbjct: 724 YNMLRTTAVNVIRHLGVVGECNIQYALNPFTKEYCIIE 761


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 244 AMCCNGDCLAVVVLDRNQLQNTDXEVLESL--EYTSDNVELLCKKVCVI 384
           A C   D L    L   Q  NTD +V ++L    ++D+ +L+  K C++
Sbjct: 204 ASCARWDSLFTFSLSLFQTGNTDWKVCKALLDSASNDDSKLVPLKDCIL 252


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -1

Query: 400 CCNYQLSHILFCITIQRCH*CILNFPTLPXPCFAAD 293
           CCN++  H        + H   +N  TL   C++ D
Sbjct: 109 CCNHESDHSRKHFEKNKKHCVFVNIITLKCHCYSCD 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,807
Number of Sequences: 5004
Number of extensions: 36836
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)