Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e05
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072...    28   3.9  
05_01_0520 - 4492182-4492780,4496886-4497951                           27   5.2  

>03_05_0466 -
           24602715-24603964,24605762-24605944,24606381-24607286,
           24609446-24609516,24609737-24609846,24610073-24610108,
           24610211-24610278,24610655-24610760,24610850-24610997,
           24611091-24611218,24611319-24611454,24611924-24612072
          Length = 1096

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 340 CILNFPTLPXPCFAADFGPTPQRPNNRHCNTSHLQLHC 227
           C+++  T P P  +      P+R  N  CNTS L  +C
Sbjct: 23  CLIHPSTPPCPVCSHSLSLPPERNPNYRCNTSLLIDYC 60


>05_01_0520 - 4492182-4492780,4496886-4497951
          Length = 554

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 226 YSVIEGAMCCNGDCLAVVVLDRNQLQNTDXEVLESLEYTSD 348
           Y V +G +  + DCL  V  DR+ L      VLE  +Y+SD
Sbjct: 257 YGVDDGFIDVSQDCLCFVNTDRDDLYKLSVWVLE--DYSSD 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,294
Number of Sequences: 37544
Number of extensions: 220540
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)