Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e05
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    30   0.88 
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical ...    29   1.5  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    27   4.7  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    27   4.7  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    27   4.7  
Z98866-22|CAE18019.1|  162|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    27   8.2  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    27   8.2  
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    27   8.2  

>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +1

Query: 70  CLVAQKINLGLYNSASAEF-IFNIMHLTANVLLVPNALXKRDVKYIYNTYLKNY-SVIEG 243
           C   + INL  +N    +F IF I+H  +NVLLV          +IY  + + Y +V+  
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLV---FYSASTFFIYLIFSEKYRNVLST 316

Query: 244 AMCC-NGDCLAVVVLDRNQLQNT 309
            + C N D L V    R   + T
Sbjct: 317 CVTCRNTDELTVSSRGRQNTKTT 339


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
           protein Y57G11B.7 protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 340 CILNFPTLPXPCFAADFGPTPQRPNNRHCNTSHL 239
           CILNF  LP    A     T   PN+ HC+  +L
Sbjct: 3   CILNFLLLPLVVLAQSSCDTDGIPNHLHCSIKNL 36


>AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical
           protein C13A2.9 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 97  GLYNSASAEFIFNIMHLTANVLLVPNALXKRDVKYIYNTY 216
           GL+   S   IFN   L A++LL+ N +     K I+N +
Sbjct: 12  GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 337 ILNFPTLPXPCFAADFGPTPQRPNNRHCNTSHL 239
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 66  VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 98


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 337 ILNFPTLPXPCFAADFGPTPQRPNNRHCNTSHL 239
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 83  VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 115


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 337 ILNFPTLPXPCFAADFGPTPQRPNNRHCNTSHL 239
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 195 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 227


>Z98866-22|CAE18019.1|  162|Caenorhabditis elegans Hypothetical
           protein Y49E10.27 protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 9   CQKFNMIVLIECEXCG--VTHKMPGC 80
           C +FNM+V      CG   T K+PGC
Sbjct: 91  CHRFNMVVFEHSVFCGDSRTCKIPGC 116


>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +1

Query: 268 LAVVVLDRNQL---QNTDXEVLESLEYTSD 348
           LAV +LDRN++   +N + E+LE L+  S+
Sbjct: 216 LAVAILDRNKMAENENLENEILEILDNDSE 245


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = +1

Query: 157 VLLVPNALXKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDXEVL-- 324
           + L  N L  R V  I+NT L +   ++      GD L   + +L+  +L N +   L  
Sbjct: 92  ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151

Query: 325 -ESLEYTSDNVELLCKKVCVIV 387
             ++    +N  L  +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = +1

Query: 157 VLLVPNALXKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDXEVL-- 324
           + L  N L  R V  I+NT L +   ++      GD L   + +L+  +L N +   L  
Sbjct: 92  ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151

Query: 325 -ESLEYTSDNVELLCKKVCVIV 387
             ++    +N  L  +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 180 ERVRNKQYISRQMHNVKN 127
           ER RNKQYI  +M+ V N
Sbjct: 376 ERERNKQYIKTEMNQVPN 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,588,172
Number of Sequences: 27780
Number of extensions: 220132
Number of successful extensions: 604
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)