Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d22
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   5.1  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   5.1  

>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 43  LFSSKWSVFIV-YLIPCILGNSLFRSLHSTYINLYI*KCY 159
           L+  + +VF + ++IP  +G   F +  +T++NL   +CY
Sbjct: 139 LYRFRHTVFTLSFVIPLTIGGLAFTNKRNTFVNLQT-RCY 177


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 204 STHRFYQPTRHDFRDTWSQISYVFGPQKSNRTF 302
           ST + Y P  +D  + W + SY   P    +TF
Sbjct: 253 STFKNYTPYLNDSSEAWEKESYEKSPSVYEKTF 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,281
Number of Sequences: 5004
Number of extensions: 41948
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)