Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d22
         (515 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069727-1|AAL39872.1|  820|Drosophila melanogaster LP03135p pro...    29   3.7  
AE013599-2866|AAF57571.3|  862|Drosophila melanogaster CG10062-P...    29   3.7  
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ...    28   6.5  
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed...    28   6.5  

>AY069727-1|AAL39872.1|  820|Drosophila melanogaster LP03135p
           protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 46  FSSKWSVFIVYLIPCILGNSLFRSLH 123
           F+S W++F +YL P + G S+  +L+
Sbjct: 399 FTSSWTIFGLYLAPIVFGLSILPALY 424


>AE013599-2866|AAF57571.3|  862|Drosophila melanogaster CG10062-PA
           protein.
          Length = 862

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 46  FSSKWSVFIVYLIPCILGNSLFRSLH 123
           F+S W++F +YL P + G S+  +L+
Sbjct: 441 FTSSWTIFGLYLAPIVFGLSILPALY 466


>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
           protein.
          Length = 1150

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 17  TRSVYVMDFFLALNGQFLSCI 79
           TR  Y++DF+L  N  FLSCI
Sbjct: 898 TREKYMIDFYLTGNQIFLSCI 918


>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 20  RSVYVMDFFLALNGQFLSCI 79
           R  YV+DF+L  N  FLSCI
Sbjct: 820 REKYVIDFYLINNKTFLSCI 839


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,886,749
Number of Sequences: 53049
Number of extensions: 406752
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)