Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d22
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22177-8|CAB76721.1|  136|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related ...    29   2.0  
U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related ...    29   2.0  
AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protei...    29   2.0  
AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protei...    29   2.0  
AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    28   4.6  

>Z22177-8|CAB76721.1|  136|Caenorhabditis elegans Hypothetical
           protein ZK512.9 protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 150 EVLSQATTTHITIENVLISTHRFYQPTRHDFRDTWSQI 263
           E+L +    HI+ E +  S    ++  R DF  TWS I
Sbjct: 68  ELLRKVMNEHISDEGMTESKRAIHEAARRDFEGTWSII 105


>U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related
           protein 2, isoform b protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 260 LAPSISKIMACRLIKSVCGNQYVFYCNVCCCGLR 159
           ++PS  ++ +C    SVCG+     C +C  G+R
Sbjct: 365 VSPSPKRMKSCGSSGSVCGDVVTAICEICGIGIR 398


>U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related
           protein 2, isoform a protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 260 LAPSISKIMACRLIKSVCGNQYVFYCNVCCCGLR 159
           ++PS  ++ +C    SVCG+     C +C  G+R
Sbjct: 431 VSPSPKRMKSCGSSGSVCGDVVTAICEICGIGIR 464


>AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protein
           protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 260 LAPSISKIMACRLIKSVCGNQYVFYCNVCCCGLR 159
           ++PS  ++ +C    SVCG+     C +C  G+R
Sbjct: 365 VSPSPKRMKSCGSSGSVCGDVVTAICEICGIGIR 398


>AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protein
           protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 260 LAPSISKIMACRLIKSVCGNQYVFYCNVCCCGLR 159
           ++PS  ++ +C    SVCG+     C +C  G+R
Sbjct: 431 VSPSPKRMKSCGSSGSVCGDVVTAICEICGIGIR 464


>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 169 VACDNTSKYKDLCMYYGEIGITNY 98
           ++CD   KYK+      EIG+TNY
Sbjct: 54  LSCDGLLKYKEDVALLAEIGVTNY 77


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 217 NLCVEINTFSIVMCVVVACDNTSKYKDLCMYYGEIGITNYLIY 89
           +L VE+  + +V  + +     S +K  C Y+  IG+ +Y I+
Sbjct: 159 SLSVEVQFYCLVPFIFLFAAKLSGFKLQCAYFALIGLFSYAIF 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,205,597
Number of Sequences: 27780
Number of extensions: 228392
Number of successful extensions: 502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)