Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23d19
(417 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 141 2e-34
03_01_0066 - 537729-538163 140 3e-34
03_02_0943 + 12598616-12598789,12599790-12601250 31 0.28
06_01_0889 - 6807449-6809257 30 0.86
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 28 3.5
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746... 27 4.6
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681... 27 6.0
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 27 8.0
04_04_0008 + 22125707-22125828,22127122-22127197,22127297-221273... 27 8.0
03_06_0659 - 35345095-35345135,35345982-35347365 27 8.0
>10_07_0174 + 13815478-13815903
Length = 141
Score = 141 bits (341), Expect = 2e-34
Identities = 68/125 (54%), Positives = 90/125 (72%)
Frame = +1
Query: 1 VRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRH 180
VRTKTV EKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++
Sbjct: 4 VRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQR 63
Query: 181 SQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPA 360
VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML L ++ G++ Q
Sbjct: 64 GPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEV 123
Query: 361 TQGGY 375
+ Y
Sbjct: 124 SAPTY 128
>03_01_0066 - 537729-538163
Length = 144
Score = 140 bits (340), Expect = 3e-34
Identities = 69/119 (57%), Positives = 90/119 (75%)
Frame = +1
Query: 1 VRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRH 180
VRTKTV EKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++
Sbjct: 4 VRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQR 63
Query: 181 SQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 357
VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML L ++ G+ + QP
Sbjct: 64 GPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 31.5 bits (68), Expect = 0.28
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 142 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 321
A +++HL+RR+ + K Q EE ++ + + + LEHD+I + +T D+LK L+
Sbjct: 41 AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96
>06_01_0889 - 6807449-6809257
Length = 602
Score = 29.9 bits (64), Expect = 0.86
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 172 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDPD 294
LRH Q R I ++ + R R + YVP+ HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 196 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 318
++I++Q + +R + +V A E I DP+TK+++K +
Sbjct: 615 LAIEVQPLDDRKRKGEIVKVYANEQKKITCDPETKELIKKI 655
>03_02_0324 -
7463482-7463601,7463660-7463736,7463827-7463883,
7464154-7464246,7464528-7464654,7464836-7466794
Length = 810
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 178 HSQVRGISIKLQEEERERRD-NYVPEVSALEHDIIEVDPD 294
H Q + I KL E R R+ Y PEV A HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590
>11_04_0376 -
16965504-16966101,16966212-16966416,16967175-16968197,
16968241-16968892,16969025-16969387,16970095-16970451
Length = 1065
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 294 VGVYFDDVMFESRHFWDIVVTPL 226
V + FDDV E +W++++TP+
Sbjct: 252 VFLVFDDVWNERSDYWELLITPM 274
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 292 DTKDMLKMLDFNNINGLQLTQPATQ 366
DTKDMLK +D+ + G +T +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621
>04_04_0008 +
22125707-22125828,22127122-22127197,22127297-22127367,
22127502-22127995,22128079-22128239,22128329-22128532,
22129292-22129526,22129996-22130591
Length = 652
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 205 KLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 318
+LQE D + E+ H+I+E + D + ML++L
Sbjct: 543 RLQENRGGVDDYLMEEIRVRSHEILENEEDMQQMLRIL 580
>03_06_0659 - 35345095-35345135,35345982-35347365
Length = 474
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 339 PATNTASYPGWLW 377
PATN A YPG LW
Sbjct: 370 PATNDAPYPGKLW 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,668,987
Number of Sequences: 37544
Number of extensions: 179604
Number of successful extensions: 517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -