Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d15
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    28   1.2  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   5.0  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   5.0  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   8.7  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   8.7  

>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +1

Query: 304 HYTDQDKDYNAAYTADEYNSLVRTVLLRLIEKALATLTNRLHITTIDQLKKFRDYLNSDA 483
           HY+  +      YT DE     R  LL           + ++  TIDQ+K+    L+S+ 
Sbjct: 3   HYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVY--TIDQVKEAYQVLSSEK 60

Query: 484 DAGEFQIFLNQE 519
           D  ++QI   +E
Sbjct: 61  DRQQYQIKQEEE 72


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = +1

Query: 475 SDADAGEFQIFLNQEDCVMLKNLSNLASKFFNVRCVADTLEVMLEALRNNIELVQPESDA 654
           SD DA + Q    +E   M + ++ + ++   +R + + L+   EALRN+ E +  +S  
Sbjct: 2   SDQDALDTQ---EKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVY 58

Query: 655 VRRIVIKMTQE 687
           V  +   +T E
Sbjct: 59  VGNVDYSVTPE 69


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 43  ESIKKIMDDTEAFEKEQEAERLRAEQTAANALLN 144
           E  K   DD+E  EKE E ER    +  A A+ +
Sbjct: 385 EPQKDSKDDSEKVEKETEVERKEENEAEAEAVFD 418


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 469 LNSDADAGEFQIFLNQEDCVMLKNLSNLASKFFNV 573
           LNS+ DAG F  F N+ D    K +    +   N+
Sbjct: 528 LNSEIDAGYFDDFTNENDMSKYKEVHEKQAAIANM 562


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 535 KNLSNLASKFFNVRCVADTLEVMLEALRNNIEL 633
           K LSN+ +K FN++   + LE +  ++  ++ L
Sbjct: 221 KFLSNVKTKVFNMKASTEILESLFTSIEESLSL 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.128    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,781
Number of Sequences: 5004
Number of extensions: 50471
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)