Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d14
         (265 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    20   3.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    20   3.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    20   3.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    20   3.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    20   3.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           20   3.9  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    20   3.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    20   3.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   6.8  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = -2

Query: 264 FXFLQDTAMSFSSRRR-RSEDPG--FXDPX---TLPPKCYS 160
           + F+   A  +  + R +   PG  + +P    T PP CYS
Sbjct: 4   YQFVNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYS 44


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = -2

Query: 264 FXFLQDTAMSFSSRRR-RSEDPG--FXDPX---TLPPKCYS 160
           + F+   A  +  + R +   PG  + +P    T PP CYS
Sbjct: 4   YQFVNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYS 44


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = -2

Query: 264 FXFLQDTAMSFSSRRR-RSEDPG--FXDPX---TLPPKCYS 160
           + F+   A  +  + R +   PG  + +P    T PP CYS
Sbjct: 4   YQFVNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYS 44


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = -2

Query: 264 FXFLQDTAMSFSSRRR-RSEDPG--FXDPX---TLPPKCYS 160
           + F+   A  +  + R +   PG  + +P    T PP CYS
Sbjct: 4   YQFVNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYS 44


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = -2

Query: 264 FXFLQDTAMSFSSRRR-RSEDPG--FXDPX---TLPPKCYS 160
           + F+   A  +  + R +   PG  + +P    T PP CYS
Sbjct: 4   YQFVNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYS 44


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = -2

Query: 264 FXFLQDTAMSFSSRRR-RSEDPG--FXDPX---TLPPKCYS 160
           + F+   A  +  + R +   PG  + +P    T PP CYS
Sbjct: 4   YQFVNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYS 44


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = -2

Query: 264 FXFLQDTAMSFSSRRR-RSEDPG--FXDPX---TLPPKCYS 160
           + F+   A  +  + R +   PG  + +P    T PP CYS
Sbjct: 4   YQFVNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYS 44


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = -2

Query: 264 FXFLQDTAMSFSSRRR-RSEDPG--FXDPX---TLPPKCYS 160
           + F+   A  +  + R +   PG  + +P    T PP CYS
Sbjct: 4   YQFVNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYS 44


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 19.4 bits (38), Expect = 6.8
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +1

Query: 19  RPERSTLIQSLDPSGXVFSYPPXSVRVTVV 108
           RP     I   +PS  +F YP      T V
Sbjct: 89  RPPPDEPIDDYEPSFDLFYYPSRQTLYTPV 118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,742
Number of Sequences: 336
Number of extensions: 682
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4271720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)