Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d14
         (265 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   0.99 
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   3.0  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    24   3.0  

>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 74  PILLNQCA*LSSDLXNFIFHFLKST*RI 157
           P+ LN C  ++  + +FI  FL+ST ++
Sbjct: 490 PLNLNVCCCIAEPIQSFILSFLRSTYKV 517


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 198 NPGPRIVSVYLKSSSPYLEE 257
           N G R  S+Y  +SSPY+ +
Sbjct: 708 NEGMRTSSIYSSTSSPYIRD 727


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 172 WWXRXGIXKTRVLGSSPST*KAHRRILKK 258
           WW    +    + GS P T   H+RI++K
Sbjct: 272 WWSMGILIFDLLTGSPPFTANNHKRIMEK 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 805,187
Number of Sequences: 5004
Number of extensions: 11361
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)