Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d14
         (265 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-4|AAK21419.2|  438|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z68220-4|CAA92489.2|  408|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z66520-1|CAA91388.1|  655|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U00052-4|AAK21419.2|  438|Caenorhabditis elegans Hypothetical
           protein K02F3.7 protein.
          Length = 438

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 22  PERSTLIQSLDPSGXVFSYPPXSVR 96
           P+ ST  Q L PSG    Y P S R
Sbjct: 201 PKTSTTFQLLAPSGETLPYKPASAR 225


>Z68220-4|CAA92489.2|  408|Caenorhabditis elegans Hypothetical
           protein T20D3.7 protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 139 KIYVANPAITFWWXRXGIXKTRVLGSSPST*KAHRRILK 255
           KIY     I   +    I KT V+GS P+T K    + K
Sbjct: 245 KIYFLLVRIKIKYMEIAILKTEVVGSGPNTFKESETVAK 283


>AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical
           protein F20H11.4 protein.
          Length = 446

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 171 LVXAXRDPKNPGPRIV 218
           L+ A RDPK PGP ++
Sbjct: 300 LLKALRDPKRPGPPVI 315


>Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical
           protein T21H8.2 protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 168 ILVXAXRDPKNPGPRIVSVYLKSSSPYLEEN 260
           ++V A   P+N G  + + +  SSSP + +N
Sbjct: 160 VMVTATTSPENSGEMLTNCFAFSSSPSIGDN 190


>Z66520-1|CAA91388.1|  655|Caenorhabditis elegans Hypothetical
           protein F49E12.1 protein.
          Length = 655

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 162 YNILVXAXRDPKNPGPRIVSVYLKSS 239
           +N LV A R  + P PR VSV+L SS
Sbjct: 177 FNTLVSASRRNR-PNPREVSVFLLSS 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,491,505
Number of Sequences: 27780
Number of extensions: 65273
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)