Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d14
         (265 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           26   0.090
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           26   0.090
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   2.6  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 25.8 bits (54), Expect = 0.090
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 159 RYNILVXAXR-DPKNPGPRIVSVYLKSSSPYLEEN 260
           RYN  +     + K PGP+ + VYL+ S P+ E+N
Sbjct: 57  RYNFQLKPYNPEHKPPGPKDL-VYLEPSPPFCEKN 90


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 0.090
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 159 RYNILVXAXR-DPKNPGPRIVSVYLKSSSPYLEEN 260
           RYN  +     + K PGP+ + VYL+ S P+ E+N
Sbjct: 58  RYNFQLKPYNPEHKPPGPKDL-VYLEPSPPFCEKN 91


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 258 FLQDTAMSFSSRRRRSEDPGFXDPXTLP 175
           FLQ  ++  +   RR+  PG   P   P
Sbjct: 42  FLQCASLKLAFEPRRNPGPGSKGPRDFP 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,701
Number of Sequences: 438
Number of extensions: 771
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)