Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23d07
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.57
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 29 0.57
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 4.0
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 5.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 5.4
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 26 5.4
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 7.1
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 7.1
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 7.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.1
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme... 26 7.1
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 9.4
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 9.4
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.5 bits (63), Expect = 0.57
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -3
Query: 235 RASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDI 56
+A N +E ++ ND N N PT + VV ++E +ASN +++ + D
Sbjct: 24 QAKSKNSVAEDNVDRESNDGNNQVNEPTGNDNTQVVENTEDISASNVVSAEGAEASTGDA 83
Query: 55 MECLLKTTDNL 23
+T++N+
Sbjct: 84 STQSPETSENV 94
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 29.5 bits (63), Expect = 0.57
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = -2
Query: 677 VRVTTNPNGAVYLLYVNKSR*RRGARMQLITYAPRVPFKDGVIDLRLIFIGRLFSYPLTK 498
V+ T + + LL++N S + A + + AP V + +RLIF GR + L
Sbjct: 138 VKDTNDLKDRIRLLHLNSSS-KLNAFLHDLINAPNVSAEMKENCVRLIFFGRKYDPFLRS 196
Query: 497 RVFALTL 477
R+F LT+
Sbjct: 197 RMFTLTI 203
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +1
Query: 385 HDNNIFFIMPSKTNAVIIYLFKLDTEHPPTYNV----NAKTRLVSGYENSRPIN 534
HD +F + A +IY+F TE Y V T + + YE + P++
Sbjct: 769 HDKIVFLEVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEVAAAYELNEPVD 822
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 232 ASFDNGYSE-FCDKQQPNDYLN 170
AS+D+ E +CDK P DYLN
Sbjct: 348 ASYDSVDMETYCDKHTPPDYLN 369
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 496 RLVSGYENSRPININLRSITPSLNGTRG 579
RL+ YE S+PI I+L ++ S+N T+G
Sbjct: 984 RLLENYE-SKPICIDLLALDLSVNSTKG 1010
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +1
Query: 145 HPAWD----CYNNSNSRWAVVYHKTLNSRCRTTLGTAS 246
H WD C+ + + +V Y KT N + TLGT+S
Sbjct: 702 HLVWDDRVICFRVTMNENSVWYGKTCNPQLHITLGTSS 739
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 505 SGYENSRPININLRSITPSLNG 570
+G + + I+INL +TPSLNG
Sbjct: 333 TGAKYDQIIDINLSELTPSLNG 354
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +1
Query: 94 KSLKLLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLN 213
K ++ S ++ C + +WDC + WA + LN
Sbjct: 71 KDFRIRWSAIILIHCTISQSWDCLVEHGATWAKLLIALLN 110
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 710 DKMCHTCSSACVRVTTNPNGAVY 642
DK +T SSA TTNP+G+ +
Sbjct: 119 DKSKNTASSATGAATTNPSGSTF 141
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 295 QTTMTQINFNASYTSAPTPSRASF 224
Q + + +FNA+ APTPS A+F
Sbjct: 869 QPSYEEESFNATVIHAPTPSTATF 892
>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
Spe2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 106 LLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLNSRCRTTLGTAS 246
L Q++C++L D Y S S V HK + C TT AS
Sbjct: 61 LAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLAS 107
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 403 FIMPSKTNAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRPININLRSITPSLNGTRGA 582
F +P+ N +Y+ + + + + NA R+ +G +N+ RSI G
Sbjct: 349 FDLPAP-NKYALYVTNIKSGNSVGEDTNALVRIATGSAGEMYVNVETRSIQSENIGNVSL 407
Query: 583 YVI 591
YV+
Sbjct: 408 YVL 410
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 9.4
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 424 NAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRP-ININLRSITPSLNGTRGAYVISCI 600
+ VIIY F E+ P V T S E+ P I ++ I ++ G ++SC
Sbjct: 92 STVIIYAFSQADENEPPQFVLVTTHKFSINESPYPIIAVSQSPIDKTIACGFGGGLVSCY 151
Query: 601 RAPRLYRDLFTYNKYTAPLGFVVT 672
L R+ N Y+ LG +T
Sbjct: 152 HGNPL-RERGIKNSYSHNLGEPIT 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,780
Number of Sequences: 5004
Number of extensions: 61278
Number of successful extensions: 209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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