Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d07
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435...    29   3.2  
09_04_0170 + 15310240-15310397,15310523-15310605,15310689-153106...    29   5.6  
06_03_1277 + 28918140-28918279,28919552-28919761,28920179-289203...    29   5.6  
03_06_0535 + 34571718-34571918,34572341-34572502,34572904-345729...    29   5.6  
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630...    28   7.4  

>05_05_0080 -
           22243175-22243226,22243342-22243389,22243485-22243540,
           22243752-22243819,22244712-22244773,22245166-22245214,
           22245818-22245899,22245987-22246064,22246441-22246499,
           22246727-22246805,22246946-22247218
          Length = 301

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = -3

Query: 265 ASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLAS 86
           A   S+  P+  ++  G     +  QP+ YLN   +  P+G   +V D   A     +A+
Sbjct: 175 AENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLATGGTIVAA 234

Query: 85  VNSLTD 68
           ++ L +
Sbjct: 235 IDLLVE 240


>09_04_0170 +
           15310240-15310397,15310523-15310605,15310689-15310697,
           15310852-15310940,15311514-15311587,15311731-15311781,
           15311887-15311963,15313865-15314463
          Length = 379

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 295 QTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGA 140
           +TT T     +S  S+P+P +A+ D+G S  C    P D   Y+     DGA
Sbjct: 302 ETTTTSSTTTSS--SSPSPPQATKDDGASPQC--SFPEDIQTYFGCAAEDGA 349


>06_03_1277 +
           28918140-28918279,28919552-28919761,28920179-28920374,
           28920459-28920853,28921024-28921119,28921330-28921402,
           28921650-28921935,28923824-28923946,28924123-28924404,
           28924513-28924928
          Length = 738

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 454 DTEHPPTYNVNAKTRLVSGYENSRPININLRSITPS-LNGTR 576
           D EH    N+   T   S     RP ++N+ SIT S L GT+
Sbjct: 614 DVEHSEVSNITGSTCSSSSKVQQRPYDLNIPSITISQLRGTQ 655


>03_06_0535 +
           34571718-34571918,34572341-34572502,34572904-34572945,
           34573097-34573246
          Length = 184

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -1

Query: 663 KSQRRSVLVVCK*ISIKARRANA-ADHVRSSCPVQGRCYRPQINIYR 526
           +++RR+ LVV   + +   +A+  A HVR    V G   RP+++++R
Sbjct: 35  QARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFR 81


>03_06_0646 +
           35260497-35262371,35262500-35262683,35262906-35263007,
           35263101-35263231,35263315-35263584,35263765-35263943,
           35264229-35264275,35264452-35264541,35264596-35264645,
           35264673-35264725,35264886-35265009,35265094-35265369,
           35265460-35265593,35265672-35265758,35265864-35265977,
           35266180-35266309
          Length = 1281

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = -2

Query: 563 KDGVIDLRLIFIGRLFSYPLTKRVFALTLYVGGCSVSNLNK*MITALVLEGIIKKILLSC 384
           +DG ++  L   G + S  +    FAL++ +G C    L + +  + +   +I  I +S 
Sbjct: 218 RDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSN 277

Query: 383 SPLGQYKLT 357
           + L  Y  T
Sbjct: 278 ALLSMYGRT 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,696,297
Number of Sequences: 37544
Number of extensions: 389510
Number of successful extensions: 1056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)