Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d07
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    29   3.8  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   3.8  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   3.8  
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical ...    28   8.8  

>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 322 IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 224
           +GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 417 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 448


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform a protein.
          Length = 1128

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 322  IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 224
            +GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 1043 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 1074


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform b protein.
          Length = 1248

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 322  IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 224
            +GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 1043 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 1074


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical protein
            ZK970.5 protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 466  PPTYNVNAKTRLVSGYENSRPININLRSITP 558
            PP   VN K R ++ + +S   N + RS++P
Sbjct: 1087 PPITKVNHKPRKIASFTDSELTNYSFRSVSP 1117


>AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.4 protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -3

Query: 214 YSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKT 35
           YSE  D +   + ++  ++      +    D  T + S   ASVN   +DND+   L+  
Sbjct: 455 YSEAFDDKDEQEVIDLDDDDDEPDPNIQQPDDHTESTSKECASVNVKYEDNDVKLSLVSN 514

Query: 34  TDN 26
            D+
Sbjct: 515 GDD 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,191,776
Number of Sequences: 27780
Number of extensions: 356604
Number of successful extensions: 983
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)