Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d04
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...   254   4e-68
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...   252   1e-67
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...   252   3e-67
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439...    29   3.5  
06_03_0290 - 19193707-19193752,19193822-19194090                       28   6.0  
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811...    28   8.0  
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236...    28   8.0  

>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score =  254 bits (623), Expect = 4e-68
 Identities = 121/194 (62%), Positives = 156/194 (80%)
 Frame = +3

Query: 6   RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
           R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  +++RK RL AE VQG+NVL 
Sbjct: 41  RNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLT 98

Query: 186 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 365
           NF GM  TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT +     ++TCYAQ 
Sbjct: 99  NFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQA 158

Query: 366 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 545
           +Q+R IR+KM EI+    ++ +L+E+V+K IP+ I K+IEKA   I+PL++V +RKVK+L
Sbjct: 159 SQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKIL 218

Query: 546 KRPRFEISKLMELH 587
           K P+F++ KLME+H
Sbjct: 219 KAPKFDLGKLMEVH 232


>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score =  252 bits (618), Expect = 1e-67
 Identities = 121/194 (62%), Positives = 155/194 (79%)
 Frame = +3

Query: 6   RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
           R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  +++RK RL AE VQG+NVL 
Sbjct: 41  RNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLT 98

Query: 186 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 365
           NF GM  TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT +     ++TCYAQ 
Sbjct: 99  NFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQA 158

Query: 366 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 545
           +Q+R IR+KM EI+    ++ +L+E+V+K IP+ I K+IEKA   I+PL++V +RKVK+L
Sbjct: 159 SQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKIL 218

Query: 546 KRPRFEISKLMELH 587
           K P+F++ KLME+H
Sbjct: 219 KAPKFDLGKLMEVH 232


>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score =  252 bits (616), Expect = 3e-67
 Identities = 121/194 (62%), Positives = 154/194 (79%)
 Frame = +3

Query: 6   RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
           R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  +++RK RL AE VQGRNVL 
Sbjct: 41  RNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLT 98

Query: 186 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 365
           NF GM  TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT +     ++TCYAQ 
Sbjct: 99  NFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQA 158

Query: 366 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 545
           +Q+R IR+KM EI+    +  +L+E+V+K IP+ I K+IEK+   I+PL++V IRKVK+L
Sbjct: 159 SQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKIL 218

Query: 546 KRPRFEISKLMELH 587
           K P+F++ KLME+H
Sbjct: 219 KAPKFDLGKLMEVH 232


>11_01_0558 -
           4396750-4396986,4397699-4398050,4398266-4398504,
           4398608-4398709
          Length = 309

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 438 EVVNKLIPDSIAKDIEKACHGIYPLRD 518
           ++VN  IPD + + ++K C  IY LR+
Sbjct: 34  QLVNTGIPDDLLERVKKVCSDIYKLRE 60


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 181 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 270
           +A S A T  P  S GW+  G  S+ P+L+
Sbjct: 67  AAGSAARTRSPSQSNGWITGGSASAMPSLV 96


>09_04_0689 -
           19480409-19480599,19480780-19480889,19481032-19481117,
           19481410-19481523,19481697-19482066,19482216-19482346,
           19482628-19482736,19482901-19483022,19483113-19483219,
           19483447-19483551,19483654-19483812,19484071-19484126,
           19484200-19484251,19486724-19486821,19487086-19487210
          Length = 644

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 674 LNTLLNGRLVALRPFRLVSGFPLASTAFAVKFHQLRDLETGPL 546
           L+TL +G++V     R +SG P    A  V +H L   E GPL
Sbjct: 366 LSTLPDGKIV-----RGLSGLPKQGPAVIVGYHMLLGFELGPL 403


>04_03_0983 +
           21423086-21423280,21423330-21423404,21423531-21423632,
           21423721-21423774,21423880-21423972,21424526-21424618,
           21427329-21427433,21427517-21427615,21427701-21427997,
           21428512-21428622
          Length = 407

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 223 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 80
           +++  +R+ PW L++  R  T +A  +  +KD SA   + +S  E  K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,062,671
Number of Sequences: 37544
Number of extensions: 407935
Number of successful extensions: 1266
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)