Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23d04
(687 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 321 6e-88
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 321 6e-88
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 291 4e-79
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 289 2e-78
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 227 8e-60
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 215 4e-56
AE013599-2921|AAF57537.1| 632|Drosophila melanogaster CG15904-P... 29 7.9
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 321 bits (788), Expect = 6e-88
Identities = 159/227 (70%), Positives = 181/227 (79%), Gaps = 5/227 (2%)
Frame = +3
Query: 6 RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLC
Sbjct: 42 RQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLC 101
Query: 186 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 365
NFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ
Sbjct: 102 NFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQ 161
Query: 366 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 545
+QVR IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVL
Sbjct: 162 SQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVL 221
Query: 546 KRPRFEISKLMELHXXXXXXXXXXXDKSE-----RPEGYEPPVQESV 671
K+PRF++SKL+ELH SE RPEGYEPPVQE+V
Sbjct: 222 KKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 268
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 321 bits (788), Expect = 6e-88
Identities = 159/227 (70%), Positives = 181/227 (79%), Gaps = 5/227 (2%)
Frame = +3
Query: 6 RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLC
Sbjct: 42 RQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLC 101
Query: 186 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 365
NFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ
Sbjct: 102 NFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQ 161
Query: 366 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 545
+QVR IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVL
Sbjct: 162 SQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVL 221
Query: 546 KRPRFEISKLMELHXXXXXXXXXXXDKSE-----RPEGYEPPVQESV 671
K+PRF++SKL+ELH SE RPEGYEPPVQE+V
Sbjct: 222 KKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 268
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 291 bits (715), Expect = 4e-79
Identities = 151/229 (65%), Positives = 174/229 (75%), Gaps = 7/229 (3%)
Frame = +3
Query: 6 RQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADTDAERSFRKFRLIAEYVQGRNVL 182
RQ+G TLVNRTQG +IAS+ KGRVFEVSL DLQ D D E SFRKFRLIAE VQ RNVL
Sbjct: 42 RQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDIDPEHSFRKFRLIAEDVQDRNVL 101
Query: 183 CNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQ 362
CNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYA
Sbjct: 102 CNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAH 161
Query: 363 HTQVRAIRK-KMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVK 539
+QVR IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVK
Sbjct: 162 ESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVK 221
Query: 540 VLKRPRFEISKLMELHXXXXXXXXXXXDKSE-RPEG----YEPPVQESV 671
VLK+PRF++SKL+ELH SE P+ +PPVQESV
Sbjct: 222 VLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAPKSTALKVKPPVQESV 270
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 289 bits (709), Expect = 2e-78
Identities = 143/205 (69%), Positives = 162/205 (79%), Gaps = 5/205 (2%)
Frame = +3
Query: 72 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 251
GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14 GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73
Query: 252 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 431
IEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74 IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133
Query: 432 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXX 611
L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSV 193
Query: 612 XXXDKSE-----RPEGYEPPVQESV 671
SE RPEGYEPPVQE+V
Sbjct: 194 EAVVSSEGAVIDRPEGYEPPVQEAV 218
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 227 bits (556), Expect = 8e-60
Identities = 108/147 (73%), Positives = 125/147 (85%)
Frame = +3
Query: 6 RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLC
Sbjct: 42 RQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLC 101
Query: 186 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 365
NFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ
Sbjct: 102 NFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQ 161
Query: 366 TQVRAIRKKMCEIITRDVTNSELREVV 446
+QVR IR +M +IIT +V+ ++L++++
Sbjct: 162 SQVRKIRARMTDIITNEVSGADLKQLL 188
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 215 bits (526), Expect = 4e-56
Identities = 106/163 (65%), Positives = 125/163 (76%), Gaps = 5/163 (3%)
Frame = +3
Query: 198 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 377
MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR
Sbjct: 1 MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60
Query: 378 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 557
IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PR
Sbjct: 61 KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPR 120
Query: 558 FEISKLMELHXXXXXXXXXXXDKSE-----RPEGYEPPVQESV 671
F++SKL+ELH SE RPEGYEPPVQE+V
Sbjct: 121 FDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 163
>AE013599-2921|AAF57537.1| 632|Drosophila melanogaster CG15904-PA
protein.
Length = 632
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -2
Query: 530 SDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDC 378
+ AN+ M LLD++ GV L+H E V + ++DC
Sbjct: 264 TSANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,105,318
Number of Sequences: 53049
Number of extensions: 671088
Number of successful extensions: 1995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1989
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -