Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23d01
(758 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D55F10 Cluster: PREDICTED: similar to CG4702-PA;... 127 3e-28
UniRef50_Q9VGD1 Cluster: CG4702-PA; n=6; Endopterygota|Rep: CG47... 104 3e-21
UniRef50_Q58445 Cluster: DNA-directed RNA polymerase subunit A' ... 35 2.5
UniRef50_Q22M46 Cluster: Putative uncharacterized protein; n=2; ... 34 4.4
UniRef50_A4YEE1 Cluster: ABC-type Na+ efflux pump permease compo... 34 4.4
UniRef50_UPI0000F20B4A Cluster: PREDICTED: hypothetical protein;... 33 7.7
>UniRef50_UPI0000D55F10 Cluster: PREDICTED: similar to CG4702-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG4702-PA - Tribolium castaneum
Length = 299
Score = 127 bits (306), Expect = 3e-28
Identities = 83/180 (46%), Positives = 104/180 (57%), Gaps = 7/180 (3%)
Frame = +3
Query: 216 EEMYSKTTGWALVALICSSTILQTIAYPQQLPLISQVTSNVRTHGPQYYSNSLPVPQQEE 395
++MY ++ GWAL AL+ SS+I+ TI+YP + VRT PQ +P Q
Sbjct: 18 QQMYKQSVGWALFALLVSSSIVSTISYPSDGGFVP-----VRT--PQ-------LPAQR- 62
Query: 396 IVQERKFAEKPNALKKVAXXXXXXIQTNSISD----GFSWTNFLSSILQTFFVNGGV-TG 560
ERKFAEKPNA+KKVA IQTN IS+ GFSW+N L ++Q F GG G
Sbjct: 63 --IERKFAEKPNAIKKVALDDLDDIQTNQISENGGGGFSWSNLLGMLMQMIFSPGGAHQG 120
Query: 561 PNKSDTLDTESSAPSPWTHFIAMGLKI--XXXXXXXXXXXDGIDKVDNGSSPMQGILAVI 734
PNKS+ LD APSPW + +++GLKI DGIDKVDNG SPMQ I V+
Sbjct: 121 PNKSEGLDDTGVAPSPWANLLSVGLKILTAILGGGAGGNSDGIDKVDNG-SPMQFINIVV 179
>UniRef50_Q9VGD1 Cluster: CG4702-PA; n=6; Endopterygota|Rep:
CG4702-PA - Drosophila melanogaster (Fruit fly)
Length = 286
Score = 104 bits (249), Expect = 3e-21
Identities = 67/176 (38%), Positives = 93/176 (52%), Gaps = 8/176 (4%)
Frame = +3
Query: 231 KTTGWALVALICSSTILQTIAYPQQLPLISQVTSNVRTHGPQYYSNSLPVPQQEEIVQER 410
K + L++++ S+ +L T A+PQQ + Q+ PV + E + R
Sbjct: 6 KVHAYLLLSIVASNCLLMTYAFPQQ-----------EVYQRQHQVTQSPVYRDESVA--R 52
Query: 411 KFAEKPNALKKVAXXXXXX-IQTNSISD------GFSWTNFLSSILQTFFVNGGVTGPNK 569
KFA KPNA KKVA ++TN I + GF+W+N LS+++ FF NG V P K
Sbjct: 53 KFAVKPNASKKVALDDIEDDLETNQIQESVGGPGGFTWSNMLSTVMTMFF-NGAVNSPTK 111
Query: 570 SDTLDTESS-APSPWTHFIAMGLKIXXXXXXXXXXXDGIDKVDNGSSPMQGILAVI 734
SD +D+ SPW + I+MGL+I DGIDKVDNG SPMQ I V+
Sbjct: 112 SDDVDSSIGLGGSPWANVISMGLRIINTLLGGGAPSDGIDKVDNGGSPMQFIQIVM 167
>UniRef50_Q58445 Cluster: DNA-directed RNA polymerase subunit A' (EC
2.7.7.6) [Contains: Mja rpoA1 intein (Mja rpol A'
intein)]; n=2; Euryarchaeota|Rep: DNA-directed RNA
polymerase subunit A' (EC 2.7.7.6) [Contains: Mja rpoA1
intein (Mja rpol A' intein)] - Methanococcus jannaschii
Length = 1341
Score = 34.7 bits (76), Expect = 2.5
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +3
Query: 327 TSNVRTHGPQYYSNSLPVPQQEEIVQERKFAEK-PNALKKVAXXXXXXIQTNSI-SDGFS 500
T +R HG + S + + EEI E +F + LK+ ++ ++ DG+
Sbjct: 741 TPKIRNHGTSFKELSFKIAKIEEIFDEDRFIKDIKEMLKEFGIELKVRVEEGNLRKDGYK 800
Query: 501 WTNFLSSIL--QTFFVNGGVTGPNKSDTL 581
+++SI + FF G T NK +TL
Sbjct: 801 TKVYVASIYNHKEFFGRIGYTYANKKETL 829
>UniRef50_Q22M46 Cluster: Putative uncharacterized protein; n=2;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 4844
Score = 33.9 bits (74), Expect = 4.4
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 366 NSLPVPQQEEIVQERKFAEKPNALKKVAXXXXXXIQTNSISDGFSWTNFLSSILQTFFVN 545
N L +E+ +Q++ F +K N+LKK A S+G S + +LS ILQ+ F+
Sbjct: 4136 NKLDPESKEQEIQDQIF-QKYNSLKKEALQALRTNTLKDESEGISKSKYLSYILQSLFLW 4194
Query: 546 GGVTGPNKSDTL-DTESSAPSPW 611
++ D L ++E+ P+
Sbjct: 4195 KNISNIKWDDILKNSEAFIDKPY 4217
>UniRef50_A4YEE1 Cluster: ABC-type Na+ efflux pump permease
component-like protein; n=2; Sulfolobaceae|Rep: ABC-type
Na+ efflux pump permease component-like protein -
Metallosphaera sedula DSM 5348
Length = 391
Score = 33.9 bits (74), Expect = 4.4
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 309 PLISQVTSNVRTHGPQYYSNSLPVPQQEEIVQERKFAEKPNALKKVA 449
P ++++ S VR+HG Y N+ + EI+ + FAE + + KVA
Sbjct: 60 PYVNELASYVRSHGGIVYINNFTIVPDVEIIFPQGFAENISNIDKVA 106
>UniRef50_UPI0000F20B4A Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 321
Score = 33.1 bits (72), Expect = 7.7
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 243 WALVALICSSTILQTIAYPQQLPLISQVTSNVRTHGPQYYSNSLPVPQQEEIVQ--ERKF 416
W L A+ S ++ I Y + LP+I Q+T T SLPV +E+++ R +
Sbjct: 210 WLLGAICLSMSLHFLILYVEPLPMIFQITPLNVTQWLMVLKISLPVILLDEVLKFAARNY 269
Query: 417 AEKPNALKKVAXXXXXXIQTNSISDGFSW 503
+KP K + ++ ++G SW
Sbjct: 270 LDKP---KDLDNPKGKACSLSACTEGISW 295
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,427,536
Number of Sequences: 1657284
Number of extensions: 14688569
Number of successful extensions: 40414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40405
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -