Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d01
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   4.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.6  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   4.6  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 345 HGPQYYSNSLPVPQQEEIVQERKFAEKPNALKK 443
           + P Y S+ L +P   EI + +    KP A K+
Sbjct: 58  NAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKR 90


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 528 QTFFVNGGVTGPNKSDTLDTESSAPSP 608
           Q+  V+G +T P K+        AP+P
Sbjct: 28  QSIIVSGSITQPTKTVIQSKRPLAPAP 54


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 345 HGPQYYSNSLPVPQQEEIVQERKFAEKPNALKK 443
           + P Y S+ L +P   EI + +    KP A K+
Sbjct: 49  NAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKR 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,855
Number of Sequences: 336
Number of extensions: 3736
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)