Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d01
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317...    28   7.0  
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           28   9.3  

>04_04_0939 -
           29530242-29531087,29531406-29531597,29531690-29531770,
           29532300-29532428,29532579-29532650,29532761-29532829,
           29533809-29533891,29534101-29534203,29534289-29534402,
           29536230-29536274
          Length = 577

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +2

Query: 596 SSVSLDSLHRYGSKNSDRSSRWWSGYRWH*QSRQWIFTNAGY 721
           +SVS  S  R+G+ N+DRSSR  S   W  ++ +++ + A +
Sbjct: 470 ASVSDISTRRFGASNADRSSR--SSVYWDQEAGRFVSSQANH 509


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 563 QQKRHLGHRIISSVSLDSLHRYGSKNSDRSSRWW 664
           +Q RH+   II S+S DS  ++  +      RWW
Sbjct: 190 KQSRHILDTIIESLSKDSRRKFLWEEMSYLERWW 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,131,886
Number of Sequences: 37544
Number of extensions: 405596
Number of successful extensions: 1000
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)