Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23d01
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 414 IYVLGRSLPVVVLAMSYCSIV 352
           ++VLG  +PV  +  SY +IV
Sbjct: 69  LFVLGLIVPVFTIVSSYAAIV 89


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 683 NAICSRSTTEKSGQNF*THSDEVSP 609
           N++C+ +TT    ++   H+D +SP
Sbjct: 631 NSMCTSTTTSPDKEHVLAHNDLMSP 655


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 289 IVWRIVDEQIKATKAQPVVFEYISSNAGDPVFTNCSLDVNSS 164
           I W+  DE+     A  VV E    N+ +   T  + + N+S
Sbjct: 197 IDWQPEDEECTEATAGAVVLETCQRNSNNSTITAGNANTNAS 238


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -3

Query: 468 CHLDHLGRLF*ERLVFQRIYVLGRSLPVVVLAMSYCSIVDH 346
           C  D+L      R+    I+     +P++++   Y  IV H
Sbjct: 197 CSFDYLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQIVSH 237


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 354 QYYSNSLPVPQQEEIVQER 410
           Q+Y  ++ VPQQ + VQ++
Sbjct: 26  QHYGAAVQVPQQTQSVQQQ 44


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +1

Query: 337 SERMVHNTTVTHCQYHNRKRSSKNVNSLKNQTLLK 441
           S + +HN       Y+N   ++ N N+  N    K
Sbjct: 319 SNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKK 353


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 549 GVTGPNKSDTLDT 587
           GVTG    DTLDT
Sbjct: 63  GVTGEEPFDTLDT 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,327
Number of Sequences: 438
Number of extensions: 4245
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)