Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23c22
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          26   0.32 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.1  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
 Frame = +3

Query: 21  RVYELTSAISAGYDKIAVVNYAEAQKSLDKIFLMTYDF-----------KGAWSNTDLGY 167
           RV +++S     +D   +VN       + K F  TY++           KG  ++  L  
Sbjct: 226 RVTKMSSINPCIFDNATIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAILKGLKTSIILMN 285

Query: 168 QTTVYAPSWNSEE--LYTTHYAVDALLEQGVDPNKIIVG 278
            TT+    W ++E    T  Y V+ +LE G   N  + G
Sbjct: 286 GTTLPQIMWGTKETSTRTDAYTVEIVLEPGTGINVTLKG 324


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 264 CWDRRLVPVTHRQRNVSC 211
           C   R+  V HRQ  V C
Sbjct: 171 CQRERVASVVHRQETVDC 188


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 327 GNYFSGTGNGPVSGTWEDGV 386
           G+Y S +G+ PVS    +G+
Sbjct: 65  GSYDSSSGDSPVSSHSSNGI 84


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +3

Query: 132 FKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGVDPNKIIV 275
           F G + +T++G +       +N  E   TH  +D      +  +K ++
Sbjct: 295 FNGWYMSTEIGSRDLCDVQRYNLLETIATHMGLDTRTSTSLWKDKAMI 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,342
Number of Sequences: 438
Number of extensions: 4727
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)