Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23c21
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    31   0.16 
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    29   0.50 
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    29   0.87 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   2.0  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   2.7  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.5  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   4.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   4.7  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   4.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.1  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   8.1  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 363
           ++  +L+C  C ++ EI N  M+P+++L ++ +L L+
Sbjct: 240 LQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 276


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 446 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLL 595
           + +H N YS+ R +V+      TSV  W+K     D+  + + ++ K LL
Sbjct: 619 DGVHSNGYSLVRKIVEYSDLEYTSVCPWDKNVRLGDSLLIPTRIYVKPLL 668


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +2

Query: 440 RVESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNN 619
           RV   HF   ++ R+V  ++K S     +W ++    +   L     ++  LD+  + +N
Sbjct: 282 RVHGFHFCTLNLERSVALILKNSGLLTKRWKQVESEMEDEKLLRTTRKRLSLDEPAELHN 341


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
            Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +2

Query: 542  DNFDAASL----ASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLN 709
            D F+ AS     ASV  E+S ++ A   NNAA S + + S  +++  + + ++AE  Q  
Sbjct: 833  DEFNGASETVDGASVEAERSAMEAAA-LNNAAESTEVVGSSPESVASEQEENVAESAQAR 891

Query: 710  I 712
            +
Sbjct: 892  V 892


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 446 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKIN 541
           + LH N+YS+ R ++ V+  SV     W  +N
Sbjct: 78  KDLHPNIYSLLRLLIAVLAVSVVFFTAWGCVN 109


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 361 DTCKHQLCSMCIRKIRKRKKNTMS 432
           ++CK   C++CIR+  K + N  S
Sbjct: 77  ESCKKHTCAICIRQCHKCESNVCS 100


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 380 YAQCAYARLGNEKKIPCPLCRVESLHFNVYS 472
           + +C    LG+ KK  C LC+ +     VYS
Sbjct: 35  HQECLVEWLGHSKKTHCELCKAKFEFTKVYS 65


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 256 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 363
           E +KL+ ++ +SV    +YF++P  R  ++P++  D
Sbjct: 613 ELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILAD 648


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSM 390
           +E++K +  +   +AE    F+Q +  +T I    L  C  +L S+
Sbjct: 336 VEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSL 381


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +1

Query: 271  QCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCIRKIRKRKKNTMSPVQG*K 450
            +C IC+SV  ++            +P     TC+H+  + C+ K  K   ++  P+    
Sbjct: 1557 ECAICYSVLSVER----------TLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCRSS 1606

Query: 451  FAF 459
            F F
Sbjct: 1607 FTF 1609


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 367 CKHQLCSMCIRKIRKRKKNTMSPVQ 441
           C H  CS C +++  RKK    PVQ
Sbjct: 167 CGHLFCSTCAKEL--RKKTVPCPVQ 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,357
Number of Sequences: 5004
Number of extensions: 45753
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)