Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23c21
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    32   0.47 
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    29   2.5  
AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMC 393
           M   KL   +CF   ++     +P D   ++PV  L  C H +C +C
Sbjct: 1   MNLEKLSELLCFQCGKLYESITKPDDEAILVPV--LGACLHSICILC 45


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = +2

Query: 518 VAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQ 697
           + Q ++++ NF    L  + + + L+DD ++   A  +   + + +QA+ +K+ +   E+
Sbjct: 498 IQQLDQVHQNFMRYKLLMLRYSEYLIDDCDEKEKAQEAIQKLENVTQAVNQKMGLPTTEE 557


>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 358 LDTCKHQLCSMCIRKIRKRKKNTMSPV 438
           LD C H LC  CI+ I K       P+
Sbjct: 274 LDKCGHTLCEGCIQNILKHSNQISCPI 300


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 557 ASLASVLFEK-SLLDDAEDSNNAA--NSDDTMLSESQAILKKLQIDIAEQ 697
           + L + LFE  SLL  AE  N  A  N DDTML+E  +  ++    +AE+
Sbjct: 71  SGLGNQLFEVVSLLGMAEVLNRTAIFNKDDTMLNEKLSFFRETVPRVAEK 120


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCIRK 402
           + FV L C+ C S+ +   +F     R  +       +C H LCS C  K
Sbjct: 22  LHFVSLVCSGCDSLGDRDRFFDNDKKRPCV------SSCNHSLCSQCFDK 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,326,629
Number of Sequences: 27780
Number of extensions: 265864
Number of successful extensions: 892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)