Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23c17
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 235 6e-63
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 171 7e-44
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 157 2e-39
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 155 8e-39
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 147 2e-36
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 132 5e-32
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 123 3e-29
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 110 2e-25
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 60 2e-10
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.68
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 27 2.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 4.8
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 4.8
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 26 6.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.3
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.3
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 235 bits (574), Expect = 6e-63
Identities = 112/186 (60%), Positives = 151/186 (81%)
Frame = +3
Query: 168 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSV 347
++D+ KP ++RLSNI AA++VADAIRTSLGP+GMDKMIQ GEV +TNDGATILK +SV
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70
Query: 348 IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQL 527
+HPAAKMLV+LS AQD+EAGDGTTSVV++AG++L AEKLL+KGIHPTVI++ FQ+A
Sbjct: 71 LHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGF 130
Query: 528 ALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVG 707
+ ++ + ++L++ ++LL+AA TSLNSK+VSQ+S +LAPIAV A+ V++P V
Sbjct: 131 TVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDP---RVA 187
Query: 708 ARVDLR 725
VDL+
Sbjct: 188 TNVDLK 193
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 171 bits (417), Expect = 7e-44
Identities = 88/163 (53%), Positives = 122/163 (74%), Gaps = 2/163 (1%)
Frame = +3
Query: 204 SNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELS 383
S+I A K VA+ +RTSLGPRG+DK++ + +GE+T+TNDGATIL QM V H AK+LV+LS
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLS 97
Query: 384 RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPV 563
++QD E GDGTT VVV+AGALL+ AE L+ KGIHP I+DG++KA Q+A++ ++ +S V
Sbjct: 98 KSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVV 157
Query: 564 DLNNEDA--LLKAAATSLNSKVVSQHSTILAPIAVQAIRAVME 686
D + E+ L ++A TSL SKVVS+ A IAV A+ +V +
Sbjct: 158 DFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVAD 200
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 157 bits (380), Expect = 2e-39
Identities = 80/170 (47%), Positives = 114/170 (67%), Gaps = 4/170 (2%)
Frame = +3
Query: 174 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIH 353
D S+ LSNINA AV D IRT+LGP G DK++ GEV I+NDGATI+K + ++H
Sbjct: 18 DDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVH 77
Query: 354 PAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLAL 533
PAAK LV+++RAQD E GDGTTSVVV AG LL A ++ G+ +I G++KA QLA+
Sbjct: 78 PAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAV 137
Query: 534 QVVENMSTPVDLNNE----DALLKAAATSLNSKVVSQHSTILAPIAVQAI 671
++ ++ +DL++E D L K A+T++NSK++ +ST + V A+
Sbjct: 138 NKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAV 187
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 155 bits (375), Expect = 8e-39
Identities = 72/161 (44%), Positives = 114/161 (70%)
Frame = +3
Query: 198 RLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVE 377
++SNI AAKAVAD IRT LGPR M KM+ G V +TNDG IL+++ V HPAAK ++E
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIE 80
Query: 378 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMST 557
L+R QD E GDGTTSV+++AG +L +A LL + IHP V+ F++AL+ AL +++ ++
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITL 140
Query: 558 PVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAV 680
PV++++ + + T + +K+V++ S ++ +A++A+R V
Sbjct: 141 PVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTV 181
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 147 bits (356), Expect = 2e-36
Identities = 74/170 (43%), Positives = 115/170 (67%), Gaps = 1/170 (0%)
Frame = +3
Query: 174 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIH 353
+K D+R N+ A A+A+ +++SLGP G+DKM+ G+VT+TNDGATIL + V H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 354 PAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLAL 533
PA K+LVEL++ QD E GDGTTSVV+IA LL A +L++ IHPT I G++ A++ A+
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 534 Q-VVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAV 680
+ + + +S VD +++L+ A TS++SK++ S + +AV A+ +V
Sbjct: 135 KFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSV 184
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 132 bits (319), Expect = 5e-32
Identities = 71/164 (43%), Positives = 109/164 (66%), Gaps = 6/164 (3%)
Frame = +3
Query: 198 RLSNINAAKAVADAIRTSLGPRGMDKMIQA-ANGEVTITNDGATILKQMSVIHPAAKMLV 374
RLS+ A AV D ++++LGP+GMDK++Q+ ++G++ +TNDGATILK +++ + AAK+LV
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLV 81
Query: 375 ELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQV----- 539
+S+ QD E GDGTTSV V A LL AE ++ IHP VI DG++ A + A+
Sbjct: 82 NISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASS 141
Query: 540 VENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAI 671
++N S P ++ L A T+L+SK++SQ+ A +AV A+
Sbjct: 142 IDNSSDPAKFRSD--LENIARTTLSSKILSQNKNHFAQLAVDAV 183
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 123 bits (296), Expect = 3e-29
Identities = 62/161 (38%), Positives = 97/161 (60%)
Frame = +3
Query: 207 NINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSR 386
NI+AA + D ++++LGP G KM+ G + +T DG +L +M + +P A + + +
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAAT 80
Query: 387 AQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVD 566
AQD GDGTTSV ++ G LL AE +++G+HP++ISDGF A AL +++ T +
Sbjct: 81 AQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFE 140
Query: 567 LNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEP 689
++ E LL A TSL++K+ S+ LAP V AI + P
Sbjct: 141 VDRE-VLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRP 180
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 110 bits (265), Expect = 2e-25
Identities = 62/191 (32%), Positives = 106/191 (55%), Gaps = 2/191 (1%)
Frame = +3
Query: 117 IMAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANG 296
+ PKA G + Y+ D + N NA + +++ RTSLGP G +K++
Sbjct: 3 LRVPKASGPQLFREG--YRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQ 60
Query: 297 EVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQK 476
+ +TND ATI++++ VIHPAAK++V+ ++ Q+ E GD VVV G LL AE +++
Sbjct: 61 QTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRM 120
Query: 477 GIHPTVISDGFQKALQLALQVVENMSTP--VDLNNEDALLKAAATSLNSKVVSQHSTILA 650
G+ P I+ G++ AL ++V+E + + +E L+KA T ++SK + L+
Sbjct: 121 GLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAIRTCISSKQYG-NEDFLS 179
Query: 651 PIAVQAIRAVM 683
+ +AI V+
Sbjct: 180 DLVAKAILTVL 190
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 60.5 bits (140), Expect = 2e-10
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 5/176 (2%)
Frame = +3
Query: 102 RLNINIMAPKAGGD-AIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKM 278
RL + I + G A+ + KD D R S + +A A+ +LGP+G + +
Sbjct: 11 RLPLRIAGRRIPGRFAVPQVRTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVL 70
Query: 279 IQAANGEVTITNDGATILKQMSV----IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 446
I G IT DG T+ + +S+ + A+++ +++ + AGDGTT+ V+ A+
Sbjct: 71 IDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAI 130
Query: 447 LDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVDLNNEDALLKAAATSLN 614
+ + G +P + G Q A+ ++ ++ + D+ + + + A S N
Sbjct: 131 FSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQ--ANKRDITTSEEISQVATISAN 184
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 599 CNITKFQSSFTTLNYFGTHCSASNSS 676
CNI KF SSF T N F T SS
Sbjct: 276 CNIPKFNSSFKTSNDFFTFTKTEESS 301
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 341 ECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 454
EC S K+ ++I+C R+ S+ N I S Y +GF
Sbjct: 87 ECLLSGGKSFAKVINCLRFPSFLINFIFSVYQTSALGF 124
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 552 STPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPI 692
ST D L+ + N ++ H +ILAP +RA++ P+
Sbjct: 2537 STSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPV 2583
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 701 TTNNRFHYCSNC--LHCNGCQNS*VL*NYFGI 612
T NR H+C NC + CN C + + + GI
Sbjct: 184 TFTNRKHHCRNCGGVFCNQCSSKTLSLPHLGI 215
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +3
Query: 465 LLQKGIHPTVISDGFQ--KALQLALQVVENMSTPVDL---NNEDALL 590
+L +G ++ D Q K + AL+V++NM T VDL N ALL
Sbjct: 375 ILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASALL 421
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 8.3
Identities = 29/116 (25%), Positives = 43/116 (37%)
Frame = +3
Query: 180 SKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPA 359
+K D + A AD + TS M + + ANG+ + S HPA
Sbjct: 1859 TKNRDSLYQKLVARAPGADVLSTSHFATSMSRDLGKANGKSNFLSSKLANALSFSTTHPA 1918
Query: 360 AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQL 527
K ++I + V +AG + L Q + P VI+D K L L
Sbjct: 1919 TKRW----ERREISNFNYLQIVNTLAGRTYND---LTQYPVFPWVIADYTSKELDL 1967
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 461 LSRIQQRTSNNNY*CCSITSFNI 393
LS Q TS NN+ C SI +F I
Sbjct: 177 LSNRQLNTSENNWTCLSIENFGI 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,410
Number of Sequences: 5004
Number of extensions: 52892
Number of successful extensions: 172
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -