Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23c16
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 88 2e-18
08_01_0337 - 2994086-2995489 28 2.8
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 27 4.9
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 6.4
11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377... 27 6.4
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 27 6.4
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529... 27 8.5
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 88.2 bits (209), Expect = 2e-18
Identities = 40/79 (50%), Positives = 59/79 (74%)
Frame = +1
Query: 139 KGQGYQKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKD 318
K + ++F +RNIVE AA+RD+ +A V+ + LPKLYAK+H+CVSCAIH+ +VR RS+++
Sbjct: 32 KDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSREN 91
Query: 319 RRIRTPPKSNFPRDMSRPQ 375
RR R PP+ F R + P+
Sbjct: 92 RRDRRPPE-RFRRRVPDPR 109
Score = 72.9 bits (171), Expect = 1e-13
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 47 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIK 157
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIK 37
>08_01_0337 - 2994086-2995489
Length = 467
Score = 28.3 bits (60), Expect = 2.8
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Frame = +1
Query: 130 VRAKGQGYQKFVIRNIVEAAAVRDINDASVYPMFQ------LPKLYAKLHYCVSCAIHSK 291
V A+G Y+ V R A+ R ++ ASV+P P++ + C C +
Sbjct: 81 VAARGAAYRALVQRGAAFASRPRAVSPASVWPHLDGPPAGPPPRVLRRATLCARCPRLPR 140
Query: 292 VVRNRSKKDRRIRTPPKSNFP 354
R R DR P + P
Sbjct: 141 PRRGRCSGDRDGALPVRDALP 161
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 112 MHKLRAVRAKGQGYQKFVIRNIVEAA-AVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS 288
+ KL A +K G K +R + E +R DA + + ++ YC + S
Sbjct: 434 IEKLEAAASKIFGGDKSRLRKVEELRETIRATEDAKCCALREYERIKVWQQYCFTKLFRS 493
Query: 289 KVVRNRSKKDR 321
V NRS+ +R
Sbjct: 494 LVENNRSELNR 504
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 279 HPQQSCQEQIEERQKNPYSSQE 344
+PQQS Q+Q EE+Q P SS +
Sbjct: 616 NPQQSQQQQPEEQQSIPQSSNQ 637
>11_01_0488 +
3770410-3770774,3771197-3771284,3771383-3771466,
3772128-3772224,3772324-3772411,3772800-3772848,
3773044-3773238,3773713-3774159
Length = 470
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 103 SCEMHKLRAVRAKGQGYQKFVIRNIVEAAAVRDIN-DASVYPMFQLPKLY 249
SC + RA+ ++I NI ++ +RD+N S YP+ L K Y
Sbjct: 55 SCHAGQSRALVNYDDDRGTYIIFNIADSLFIRDLNYVCSRYPLASLYKYY 104
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +2
Query: 266 ACHAPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVHRQC 382
ACH ++ G+D +K + +P + +C H C
Sbjct: 705 ACHVDYNEEIRGSDEKKPAANKFIPSSQRVVSCAAHPFC 743
>03_02_0054 +
5292167-5292336,5292434-5292526,5292828-5293003,
5293076-5293122,5293732-5293801,5293960-5294186,
5294274-5294327,5294470-5294545,5294679-5294884
Length = 372
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = -2
Query: 91 TSMLGASSITALTSHVSNLRSGEQ 20
+SML +S+++++S +SNLRS +Q
Sbjct: 164 SSMLRRASVSSISSFLSNLRSHDQ 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,213,479
Number of Sequences: 37544
Number of extensions: 209509
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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