Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23c16
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   105   2e-23
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical ...    27   5.7  
AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical ...    27   5.7  
AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  105 bits (251), Expect = 2e-23
 Identities = 47/67 (70%), Positives = 55/67 (82%)
 Frame = +1

Query: 139 KGQGYQKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKD 318
           K +  +KFV+RNIVEAAAVRDI DAS Y  + LPKLY KLHYC++CAIHSKVVRNRS++ 
Sbjct: 32  KDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSKVVRNRSREA 91

Query: 319 RRIRTPP 339
           RR R PP
Sbjct: 92  RRDRNPP 98



 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 27/37 (72%), Positives = 28/37 (75%)
 Frame = +2

Query: 47  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIK 157
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIK
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIK 37


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 261 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 386
           ++ V + P +S   ++ + QKN Y+S E    GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


>Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical
           protein F13D2.4 protein.
          Length = 286

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -2

Query: 52  SHVSNLRSGEQRTAEKK 2
           SH+++LRSGE+R  EKK
Sbjct: 262 SHLTHLRSGERRPPEKK 278


>AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical
           protein Y51A2A.11 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 38  VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 139
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 83  IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116


>AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical
           protein Y51A2A.7 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 38  VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 139
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183


>AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical
           protein Y32F6A.2 protein.
          Length = 673

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +1

Query: 85  WTWSR*SCEMHKLRAVRAKGQGYQKFVIRNIVEAAAVRDI 204
           W WS      H LRA+     G QKF   N       RD+
Sbjct: 344 WVWSWADAAAHALRALNVGCGGIQKFASLNNFHNKIHRDV 383


>Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.2 protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 172 NIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNF 351
           N++    +RD N   +   ++L  +   L YC+   +++  V NR      ++T  KS  
Sbjct: 82  NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRC-----VKTYLKSKD 136

Query: 352 PRDMSR 369
            R++ R
Sbjct: 137 TRELKR 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,962,833
Number of Sequences: 27780
Number of extensions: 162640
Number of successful extensions: 392
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)