Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23c14
         (721 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L08582-1|AAF66141.1|  355|Homo sapiens lysosomal-associated memb...    36   0.19 
J04182-1|AAA60382.1|  416|Homo sapiens lysosomal membrane glycop...    35   0.25 
J03263-1|AAA59524.1|  385|Homo sapiens LAMP1 protein.                  35   0.25 
BC093044-1|AAH93044.1|  417|Homo sapiens lysosomal-associated me...    35   0.25 
BC021288-1|AAH21288.1|  417|Homo sapiens lysosomal-associated me...    35   0.25 
BC007845-1|AAH07845.2|  248|Homo sapiens LAMP1 protein protein.        35   0.25 
BC006345-1|AAH06345.2|  308|Homo sapiens LAMP1 protein protein.        35   0.25 
AL136221-7|CAI13797.1|  417|Homo sapiens lysosomal-associated me...    35   0.25 
AB209319-1|BAD92556.1|  392|Homo sapiens LAMP1 protein variant p...    35   0.25 

>L08582-1|AAF66141.1|  355|Homo sapiens lysosomal-associated
           membrane glycoprotein-1 protein.
          Length = 355

 Score = 35.5 bits (78), Expect = 0.19
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 533 YTDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSC 682
           Y  S TN TC++     Q N+TY + DN +     + N+  N +  +GSC
Sbjct: 161 YNVSGTNGTCLLASMGLQLNLTYERKDNTT--VTRLLNINPNTTSASGSC 208


>J04182-1|AAA60382.1|  416|Homo sapiens lysosomal membrane
           glycoprotein-1 protein.
          Length = 416

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 533 YTDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSC 682
           Y  S TN TC++     Q N+TY + DN +     + N+  N +  +GSC
Sbjct: 221 YNVSGTNGTCLLASMGLQLNLTYERKDNTT--VTRLLNINPNKTSASGSC 268


>J03263-1|AAA59524.1|  385|Homo sapiens LAMP1 protein.
          Length = 385

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 533 YTDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSC 682
           Y  S TN TC++     Q N+TY + DN +     + N+  N +  +GSC
Sbjct: 190 YNVSGTNGTCLLASMGLQLNLTYERKDNTT--VTRLLNINPNKTSASGSC 237


>BC093044-1|AAH93044.1|  417|Homo sapiens lysosomal-associated
           membrane protein 1 protein.
          Length = 417

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 533 YTDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSC 682
           Y  S TN TC++     Q N+TY + DN +     + N+  N +  +GSC
Sbjct: 222 YNVSGTNGTCLLASMGLQLNLTYERKDNTT--VTRLLNINPNKTSASGSC 269


>BC021288-1|AAH21288.1|  417|Homo sapiens lysosomal-associated
           membrane protein 1 protein.
          Length = 417

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 533 YTDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSC 682
           Y  S TN TC++     Q N+TY + DN +     + N+  N +  +GSC
Sbjct: 222 YNVSGTNGTCLLASMGLQLNLTYERKDNTT--VTRLLNINPNKTSASGSC 269


>BC007845-1|AAH07845.2|  248|Homo sapiens LAMP1 protein protein.
          Length = 248

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 533 YTDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSC 682
           Y  S TN TC++     Q N+TY + DN +     + N+  N +  +GSC
Sbjct: 53  YNVSGTNGTCLLASMGLQLNLTYERKDNTT--VTRLLNINPNKTSASGSC 100


>BC006345-1|AAH06345.2|  308|Homo sapiens LAMP1 protein protein.
          Length = 308

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 533 YTDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSC 682
           Y  S TN TC++     Q N+TY + DN +     + N+  N +  +GSC
Sbjct: 113 YNVSGTNGTCLLASMGLQLNLTYERKDNTT--VTRLLNINPNKTSASGSC 160


>AL136221-7|CAI13797.1|  417|Homo sapiens lysosomal-associated
           membrane protein 1 protein.
          Length = 417

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 533 YTDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSC 682
           Y  S TN TC++     Q N+TY + DN +     + N+  N +  +GSC
Sbjct: 222 YNVSGTNGTCLLASMGLQLNLTYERKDNTT--VTRLLNINPNKTSASGSC 269


>AB209319-1|BAD92556.1|  392|Homo sapiens LAMP1 protein variant
           protein.
          Length = 392

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 533 YTDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSC 682
           Y  S TN TC++     Q N+TY + DN +     + N+  N +  +GSC
Sbjct: 211 YNVSGTNGTCLLASMGLQLNLTYERKDNTT--VTRLLNINPNKTSASGSC 258


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,377,021
Number of Sequences: 237096
Number of extensions: 1025339
Number of successful extensions: 1535
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)