Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23c14
         (721 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-3511|AAF57215.3|  318|Drosophila melanogaster CG3305-PA...    43   5e-04
AY070618-1|AAL48089.1|  318|Drosophila melanogaster RE72002p pro...    40   0.003

>AE014134-3511|AAF57215.3|  318|Drosophila melanogaster CG3305-PA
           protein.
          Length = 318

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +2

Query: 551 NITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSCAGD--QWLEISW 712
           N +CI+L+ AAQ N TY   +   +F   ++N+PSNASV +  C     Q++ + W
Sbjct: 112 NTSCIMLQMAAQLNFTYEARE--GNFTTGLYNIPSNASVEDAECKSQTTQFIHLIW 165


>AY070618-1|AAL48089.1|  318|Drosophila melanogaster RE72002p
           protein.
          Length = 318

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +2

Query: 551 NITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSCAGD--QWLEISW 712
           N +CI+L+ AAQ N TY   +   +F   + N+PSNASV +  C     Q++ + W
Sbjct: 112 NTSCIMLQMAAQLNFTYEARE--GNFTTGLDNIPSNASVEDAECKSQTTQFIHLIW 165


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,825,208
Number of Sequences: 53049
Number of extensions: 326074
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)