Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23c08
         (240 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0E0N8 Cluster: Chromosome undetermined scaffold_72, wh...    33   1.6  
UniRef50_UPI0000D8A03B Cluster: hypothetical protein e1102d03.tm...    27   4.3  
UniRef50_A4XI83 Cluster: Coproporphyrinogen dehydrogenase; n=1; ...    31   6.5  
UniRef50_Q24DM3 Cluster: Putative uncharacterized protein; n=1; ...    31   6.5  

>UniRef50_A0E0N8 Cluster: Chromosome undetermined scaffold_72, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_72,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 502

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -2

Query: 74  KINRRKIKTHPFCTQAQHHKQQAK 3
           KI+R KIKT PF  QAQ H++ AK
Sbjct: 313 KISRDKIKTTPFSLQAQLHQRSAK 336


>UniRef50_UPI0000D8A03B Cluster: hypothetical protein e1102d03.tmp1;
           n=1; Eimeria tenella|Rep: hypothetical protein
           e1102d03.tmp1 - Eimeria tenella
          Length = 506

 Score = 27.1 bits (57), Expect(2) = 4.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 4   FACCLWCCAC 33
           F CCL+CC C
Sbjct: 99  FCCCLYCCCC 108



 Score = 23.0 bits (47), Expect(2) = 4.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 10  CCLWCCACVQNGC 48
           CC  CC C+ + C
Sbjct: 105 CCCCCCCCLFSCC 117


>UniRef50_A4XI83 Cluster: Coproporphyrinogen dehydrogenase; n=1;
           Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
           Coproporphyrinogen dehydrogenase - Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903)
          Length = 486

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 171 KESIYTVLNLGQVKTTIHTMFFSRS 97
           K++IY VLNLG    T+HT+   R+
Sbjct: 348 KKTIYDVLNLGPASITVHTLSIKRA 372


>UniRef50_Q24DM3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1622

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 45  MCFDFSSIYFTFINNVSYYD*KTLCELWF*PDQDLKPCICSPLLFLDNTNCV 200
           +C   SS +F FI++       + C   F  D   + C+C P  FL N  C+
Sbjct: 630 VCTLCSSNHFLFIDSTCV----SSCPQTFLEDSSNRKCVCQPNSFLQNNKCI 677


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,815,129
Number of Sequences: 1657284
Number of extensions: 2310496
Number of successful extensions: 4727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4708
length of database: 575,637,011
effective HSP length: 58
effective length of database: 479,514,539
effective search space used: 10069805319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)