Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23c08
         (240 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ...    28   2.0  
M95811-1|AAD19752.1| 1788|Drosophila melanogaster laminin B1 cha...    27   4.6  
M19525-1|AAA28663.1| 1788|Drosophila melanogaster protein ( D.me...    27   4.6  
AE014134-1348|AAN10647.1| 1788|Drosophila melanogaster CG7123-PB...    27   4.6  
AE014134-1347|AAF52563.1| 1788|Drosophila melanogaster CG7123-PA...    27   4.6  

>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
           protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 89  VIDKSKINRRKIKTHPFCTQAQHHKQQ 9
           ++D++K   +K+KT P C + +H +Q+
Sbjct: 157 LVDRTKPKMQKVKTAPKCLKPKHQQQK 183


>M95811-1|AAD19752.1| 1788|Drosophila melanogaster laminin B1 chain
           protein.
          Length = 1788

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 150 KPCICSPLLFLDNTNCV 200
           +PC C+PL  L+N+ CV
Sbjct: 478 EPCTCNPLGTLNNSGCV 494


>M19525-1|AAA28663.1| 1788|Drosophila melanogaster protein (
           D.melanogaster lamininB1 subunit mRNA, complete cds. ).
          Length = 1788

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 150 KPCICSPLLFLDNTNCV 200
           +PC C+PL  L+N+ CV
Sbjct: 478 EPCTCNPLGTLNNSGCV 494


>AE014134-1348|AAN10647.1| 1788|Drosophila melanogaster CG7123-PB,
           isoform B protein.
          Length = 1788

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 150 KPCICSPLLFLDNTNCV 200
           +PC C+PL  L+N+ CV
Sbjct: 476 EPCTCNPLGTLNNSGCV 492


>AE014134-1347|AAF52563.1| 1788|Drosophila melanogaster CG7123-PA,
           isoform A protein.
          Length = 1788

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 150 KPCICSPLLFLDNTNCV 200
           +PC C+PL  L+N+ CV
Sbjct: 476 EPCTCNPLGTLNNSGCV 492


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,912,569
Number of Sequences: 53049
Number of extensions: 116471
Number of successful extensions: 256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 24,988,368
effective HSP length: 59
effective length of database: 21,858,477
effective search space used: 437169540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)