Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23c08
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83125-12|CAB05627.1|  302|Caenorhabditis elegans Hypothetical p...    25   5.4  
Z81498-3|CAB04084.3|  260|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z81147-13|CAB03540.1|  302|Caenorhabditis elegans Hypothetical p...    25   5.4  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    25   5.4  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical pr...    25   5.4  
EF445112-1|ABQ01579.1|  265|Caenorhabditis elegans scramblase 4 ...    25   5.4  
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    25   7.2  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    25   7.2  
Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z83125-12|CAB05627.1|  302|Caenorhabditis elegans Hypothetical
           protein T15D6.1 protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 106 KKHCVNCGFNLTKI*NRVYALL 171
           +KHC +CG N+  +  +VY  L
Sbjct: 138 EKHCYDCGTNMRCVVEKVYTNL 159


>Z81498-3|CAB04084.3|  260|Caenorhabditis elegans Hypothetical
           protein F11A6.2 protein.
          Length = 260

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
 Frame = +1

Query: 10  CCLWCCACV---QNGCV 51
           CC  CCACV   Q+ CV
Sbjct: 107 CCYGCCACVGCCQHDCV 123


>Z81147-13|CAB03540.1|  302|Caenorhabditis elegans Hypothetical
           protein T15D6.1 protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 106 KKHCVNCGFNLTKI*NRVYALL 171
           +KHC +CG N+  +  +VY  L
Sbjct: 138 EKHCYDCGTNMRCVVEKVYTNL 159


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 125  QFTQCFLVVV*NVIDKSKINRRKI 54
            Q  +CFL+ + N+  +SK NRR I
Sbjct: 940  QIKKCFLIDIINLCRESKENRRTI 963


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 125  QFTQCFLVVV*NVIDKSKINRRKI 54
            Q  +CFL+ + N+  +SK NRR I
Sbjct: 940  QIKKCFLIDIINLCRESKENRRTI 963


>U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical
           protein F45F2.10 protein.
          Length = 980

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 196 QLVLSKNSKGEHIHGFKSWSG*N 128
           + V+ K     H+H F  WSG N
Sbjct: 213 EYVVEKERNNLHVHHFNEWSGDN 235


>EF445112-1|ABQ01579.1|  265|Caenorhabditis elegans scramblase 4
           protein.
          Length = 265

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
 Frame = +1

Query: 10  CCLWCCACV---QNGCV 51
           CC  CCACV   Q+ CV
Sbjct: 107 CCYGCCACVGCCQHDCV 123


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 13  CLWCCACVQNGCV 51
           C+WC  CV + C+
Sbjct: 185 CIWCGCCVHDTCI 197


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 13  CLWCCACVQNGCV 51
           C+WC  CV + C+
Sbjct: 185 CIWCGCCVHDTCI 197


>Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical
           protein F18E2.4 protein.
          Length = 335

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 115 CVNCGFNLTKI*NRVYALLC 174
           C+ CG  L  + NRV+ +LC
Sbjct: 119 CMACGSTLLLVINRVFDVLC 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,192,219
Number of Sequences: 27780
Number of extensions: 63856
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)