Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23c08
         (240 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   0.52 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   6.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   6.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 0.52
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 7  ACCLWCC 27
          +CC WCC
Sbjct: 10 SCCCWCC 16


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 115 CVNCGFNLTKI*NRVYALLCYF*IILIVYED 207
           C+N   +  K  N +  ++C+  ++  +YED
Sbjct: 118 CINANKSTDKCENGLNFIICFSKLLSDMYED 148


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 69  YFTFINNVSYYD 104
           Y  F+N  +YYD
Sbjct: 134 YSAFVNLTAYYD 145


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 163 HIHGFKSWS 137
           H HG KSW+
Sbjct: 404 HHHGSKSWT 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,817
Number of Sequences: 438
Number of extensions: 643
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)