Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23c01
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 52 7e-08
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 48 1e-06
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 37 0.003
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 37 0.004
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 36 0.005
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 33 0.045
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 33 0.060
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 32 0.079
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 31 0.18
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 29 0.56
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 29 0.74
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 28 1.3
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 28 1.3
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 28 1.3
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 27 2.2
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 3.9
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 27 3.9
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 27 3.9
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 27 3.9
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 3.9
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 5.2
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 26 5.2
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 5.2
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 26 6.9
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 26 6.9
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 6.9
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 25 9.1
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 52.4 bits (120), Expect = 7e-08
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = +2
Query: 476 CHLCGRIFMDTTNLKQHLKRFHNQKNNNRTYSCSV--CGKSYSNQGAVRTH--MIKHINR 643
C +CGR F +L+ H+ +TY C + C KS++ A++ H +I N
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265
Query: 644 KFNCDKCPSTFSSPYTLNQHKKK 712
F+CD C + F + L +H ++
Sbjct: 266 AFHCDSCGTKFGYKHMLQRHLER 288
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Frame = +2
Query: 404 HSKTHSLERSRRRIKVDANGTQVPCHLCGRIFMDTTNLKQHLKRFHNQKNNNRTYSCSV- 580
H S+E + ++ P CG+ + + L+QHL+ +N R + C
Sbjct: 3 HFNELSIEIESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLR----THSNERPFVCDYT 58
Query: 581 -CGKSYSNQGAVRTHMIKHINRK-FNC--DKCPSTFSSPYTLNQHKKKH 715
C K++ + ++ H H N K F+C D C + F + L +H + H
Sbjct: 59 GCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVH 107
Score = 36.7 bits (81), Expect = 0.004
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Frame = +2
Query: 365 CTLRFACASVLRAHSKTHSLERSRRRIKVDANGTQVPCHLCGRIFMDTTNLKQHLKRFHN 544
C LRFA L+ H + R+ +I + + C + F + L+ H++ H
Sbjct: 151 CELRFATKQKLQNH-----VNRAHEKI-ISYSCPHESC-VGHEGFEKWSQLQNHIREAH- 202
Query: 545 QKNNNRTYSCSVCGKSYSNQGAVRTHMIKH-----INRKFNC--DKCPSTFSSPYTLNQH 703
SCS+CG+ + +R H++ H + ++C + C +F+ L +H
Sbjct: 203 ------VPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKH 256
Query: 704 KKKHDDVTALHHCETCDVTY 763
+ HC++C +
Sbjct: 257 ISVIHEGNMAFHCDSCGTKF 276
Score = 33.5 bits (73), Expect = 0.034
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Frame = +2
Query: 359 EVCTLRFACASVLRAHSKTHSLERSRRRIKVDANGTQVPCHLCGRIFMDTTNLKQHLKRF 538
E C +++ S+L H +THS ER D G C + F ++LK H KR
Sbjct: 28 EECGKKYSRPSLLEQHLRTHSNERP---FVCDYTG-------CSKAFYRKSHLKIH-KRC 76
Query: 539 HNQKNNNRTYSCSV--CGKSYSNQGAVRTHMIKHINRK-FNC--DKCPSTFSSPYTLNQH 703
H N + +SC C + Q + H+ H K + C + C FS L H
Sbjct: 77 H---TNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSH 133
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 48.0 bits (109), Expect = 1e-06
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +2
Query: 407 SKTHSLERSRRRIKVDANGTQVPCHL-CGRIFMDTTNLKQHLKRFHNQKNNNRTYSCSVC 583
+K+ + S+ + + + G V C + F NLK H+ N N R + CS+C
Sbjct: 550 NKSENSSSSKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHM----NTHTNYRPFQCSIC 605
Query: 584 GKSYSNQGAVRTHMIKHINRK-FNCDKCPSTFSSPYTLNQHKK 709
KS++ Q R H H K F C C F+ LN+H K
Sbjct: 606 KKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYK 648
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 37.1 bits (82), Expect = 0.003
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +2
Query: 347 EYRCEVCTLRFACASVLRAHSKTHSLERSRRRIKVDANGTQVPCHLCGRIFMDTTNLKQH 526
+Y CE CT FA L+ H ++H+ E+ ++D T CGR F L +H
Sbjct: 69 QYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTG-----CGRQFSRRDLLLRH 123
Query: 527 LKRFHN--QKNNNRTYSCSVCGKSYSNQGAVRTHM 625
++ H Q R + ++ S SN T++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSLSNVSVSTTNL 158
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +2
Query: 560 RTYSCSVCGKSYSNQGAVRTHMIKHINRK-FNCDK-------CPSTFSSPYTLNQHKKK 712
+ Y C C ++++ ++ H+ H N K F C + C FS L +H++K
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQK 126
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 566 YSCSV--CGKSYSNQGAVRTHMIKHINRK-FNCDKCPSTFSSPYTLNQH-KKKH 715
Y C C KS++ + R H H N K F C C S+F+ LN+H +KH
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +2
Query: 461 GTQVPCHLCGRIFMDTTNLKQHLKRFHNQKNNNRTYSCSVCGKSYSNQGAVRTHMIKHIN 640
G C C + F + +L++H++ H + + + C +CGK +S + +R H H+N
Sbjct: 420 GKSFVCPECSKKFKRSEHLRRHIRSLHTSE---KPFVC-ICGKRFSRRDNLRQHERLHVN 475
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 33.1 bits (72), Expect = 0.045
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +2
Query: 335 QSNGEYRC--EVCTLRFACASVLRAHSKTHSLERSRRRIKVDANGTQVPCHLCGRIFMDT 508
+++G+Y C C R A + +H +TH +R R C LC F+
Sbjct: 438 EADGKYVCLYNGCNKRIARKYNVESHIQTHLSDRPYR------------CDLCKAGFVRH 485
Query: 509 TNLKQHLKRFHNQKNNNRTYSCSVCGKSYSNQGAVRTHMIKHI 637
+LK+HL R H N R Y C C K ++ A+ H ++I
Sbjct: 486 HDLKRHL-RIH---ENGRPYVCE-CLKRFNRLDALNRHKQRNI 523
Score = 31.9 bits (69), Expect = 0.10
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 581 CGKSYSNQGAVRTHMIKHIN-RKFNCDKCPSTFSSPYTLNQHKKKHDD 721
C K + + V +H+ H++ R + CD C + F + L +H + H++
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHEN 497
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 32.7 bits (71), Expect = 0.060
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 518 KQHLKRFHNQKNNNRTYSCSVCGKSYSNQGAVRTHM 625
K+HL+R N + +SCS C ++++ + H+
Sbjct: 40 KEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHV 75
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 581 CGKSYSNQGAVRTHMIKHINRK-FNCDKCPSTFSSPYTLNQH 703
C KS++ + +R H H N K F+C C F+ LN+H
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRH 74
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 32.3 bits (70), Expect = 0.079
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 329 FVQSNGEYRCEVCTLRFACASVLRAHSKTHS 421
FV N YRCEVC+ R+ + L+ H +THS
Sbjct: 392 FVVENKPYRCEVCSKRYKNLNGLKYH-RTHS 421
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 557 NRTYSCSVCGKSYSNQGAVRTH 622
N+ Y C VC K Y N ++ H
Sbjct: 396 NKPYRCEVCSKRYKNLNGLKYH 417
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 31.1 bits (67), Expect = 0.18
Identities = 20/74 (27%), Positives = 28/74 (37%)
Frame = +2
Query: 332 VQSNGEYRCEVCTLRFACASVLRAHSKTHSLERSRRRIKVDANGTQVPCHLCGRIFMDTT 511
+ S + C+ C RF L H HS +PC C
Sbjct: 25 IDSKRVFPCDQCAKRFTRHENLTRHKACHS------------KAEPIPCPYCEIKCKRKD 72
Query: 512 NLKQHLKRFHNQKN 553
LK+H++RFHN K+
Sbjct: 73 LLKRHIQRFHNDKS 86
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 641 RKFNCDKCPSTFSSPYTLNQHKKKHDDVTALHHCETCDV 757
R F CD+C F+ L +HK H + C C++
Sbjct: 29 RVFPCDQCAKRFTRHENLTRHKACHSKAEPI-PCPYCEI 66
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 29.5 bits (63), Expect = 0.56
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 467 QVPCHLCGRIFMDTTNLKQHLKRFHNQKNNNRTYSCSVCGKSYSNQGAVRTHMIKHI--N 640
Q PC CG T N + + N N Y C+VCG NQ R + I+ + +
Sbjct: 102 QPPCEKCGGETHMTGNGPPNEEEKWNGVRNVELYQCNVCG---HNQRFPRYNRIRALLDS 158
Query: 641 RKFNCDKCPSTFS 679
RK C + + F+
Sbjct: 159 RKGRCGEWANCFT 171
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 29.1 bits (62), Expect = 0.74
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 557 NRTYSCSVCGKSYSNQGAVRTHMIKH--INRKFN-CDKCPSTFSSP 685
NR + C CG + NQ + +T + H IN+ CD C S + P
Sbjct: 187 NRKHHCRNCGGVFCNQCSSKTLSLPHLGINQPVRVCDSCYSLRTKP 232
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 12 KFRNVYCLPLQWFTYLQINDISKSAV 89
KF +VYC+ WFT ++ + KS V
Sbjct: 125 KFGDVYCVDENWFTTSEVTEEKKSNV 150
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 80 KCSLVYICILRYLNGFNDGVVPMFRLP*HDQLYNKRGD-AREISRSHRNEFM 232
+C V+ + +D VP LP +L K A+++SRSHRNEF+
Sbjct: 217 RCPNVFKKLKEVQQPLSDVSVPSDVLPFTIKLLKKISQRAQDLSRSHRNEFL 268
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = +2
Query: 350 YRCEVCTLRFACASVLRAHSKT--HSLERSRRRIKVDANGTQVPCHLCGRIFMDTTNLKQ 523
+ C CT+ F A + H K+ H R+ + +V G+I ++
Sbjct: 5 FACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASLPPLSAEV---FAGKILSIQKQNEE 61
Query: 524 HLKRFHNQKNNNRTYSCSVCGKSYSNQGAVRTHMIKHINR 643
K+ +N C VC K + ++GA +HM +R
Sbjct: 62 VQKKAEFYQN------CEVCNKKFYSEGAYSSHMASKKHR 95
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 638 NRKFNCDKCPSTFSSPYTLNQHKKKHDDV 724
N F CDKC F L HK+ + V
Sbjct: 136 NATFRCDKCDMMFVKQSGLTNHKRTYHQV 164
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 475 LPLVRKDFHGYDKFETALKEIPQSEEQ*PHVFVQRLREELQQPGSGPDTY 624
L LV DF D + ++E+ + H FV R +L++ S PD +
Sbjct: 91 LGLVFADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEF 140
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 458 NGTQVPCHLCGRIFMDTTNLKQHLKRFHNQKNNNRTYSCSVCGKSYSNQ 604
NG + C CG IF + ++ Q H ++ + C VC + Y +
Sbjct: 153 NG-HIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFWCRVCRECYEGR 200
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 338 SNGEYRCEVCTLRFACASVLRAHSKTHSLERSRRRIKVDANGT 466
S + CEVC F +V AH K+ + ++ +R++ + T
Sbjct: 239 STEAFYCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSSSPST 281
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 446 KVDANGTQVPCHLCGRIFMDTTNLKQHLKRFHNQKNNN 559
K DA CH ++ D KQ++K FHN+ NN
Sbjct: 219 KSDALDIIAQCHQHWKVSRDR---KQYIKNFHNESVNN 253
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 557 NRTYSCSVCGKSYSNQGAVRTHMIKHINRKFNCDK 661
N + C+ CG+ Y N R + KH + F +K
Sbjct: 418 NYSNQCANCGRRYGNDPESRKELDKHSDWHFRINK 452
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Frame = +2
Query: 560 RTYSCSVCGKSYSNQGAVRTHMIKHINRKFN-C--DKCPSTFSSPYTLNQHKKKHDDVTA 730
R Y C +C K++ H+ H K + C C FS L +H + H + +
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNANS 83
Query: 731 LHHCETCDVTYNS 769
+ NS
Sbjct: 84 RRNAAAAAAANNS 96
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Frame = +2
Query: 365 CTLRFACASVLRAHSKTHSLERSRRRIKVDA---NGTQVPCHLCGRIFMDTTNLKQHLKR 535
C RF+ + L H++ H+ SRR A N + G + T N H+
Sbjct: 61 CAKRFSRSDELTRHARIHTNANSRRNAAAAAAANNSARSSNSPAGNLEPSTNNAGVHMTN 120
Query: 536 FHNQKNNNRTY 568
N N +Y
Sbjct: 121 ASMNPNVNPSY 131
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 510 VVSMKILPHKWQG 472
+V +K+ PHKWQG
Sbjct: 192 LVELKLTPHKWQG 204
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +2
Query: 341 NGEYRCEVCTLRFACASVL--RAHSKTHSLER 430
N Y+C VC C S L +HS TH+ R
Sbjct: 145 NVRYKCSVCDDYDICESCLTDNSHSNTHAFVR 176
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 377 FACASVLRAHSKTHSLERSRRRIKVDANGTQVPCHLCGRIFMDTTNLKQHLK 532
+AC LR H + + R I+V G + C C I LK +LK
Sbjct: 9 YACVVCLRGHRGSSCQHQERALIEVRTRGRPLLCKKCRAI---KQQLKSNLK 57
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -1
Query: 246 NANPDINSFL*LRDISRASPRXXXXXSCYGKRNIGTTPSLKPFKYLKIHM*TKLH--FCL 73
N P + + L+ I+ P GK +GT L F YLK T + F +
Sbjct: 18 NLPPTLPEQVFLQSINSFLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATAVQEFFRV 77
Query: 72 Y--H*FVNK 52
Y H F++K
Sbjct: 78 YQGHTFIDK 86
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 132 MASFLCFVCHSTINSITNEVTREKYREVIGMNLCQD--SHLCHICRHILNKLWLFRSKCL 305
++++LC +CH+T+ S E +GM L Q+ H + L ++ K L
Sbjct: 664 LSNYLCDLCHTTVQSGDPEGLLLTGLTPLGMELLQNYIDHTSDVQTAALIAAFVVPKKFL 723
Query: 306 -KRSSEYPSLFSQTVN 350
KR+ ++ + + +N
Sbjct: 724 DKRAEDWTESYRELLN 739
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 237 DSHLCHICRHILNKLWLFRSKCLKRSSEYPSLFSQTV 347
D LC + R KLW + LK +E+ SLFS+ +
Sbjct: 93 DEELCQL-RLTNMKLWNCKLPSLKDEAEFYSLFSKKI 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,649
Number of Sequences: 5004
Number of extensions: 65297
Number of successful extensions: 257
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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