Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23b22
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical pr...    31   0.91 
U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z81070-2|CAB03007.1|  491|Caenorhabditis elegans Hypothetical pr...    28   8.5  
L19249-1|AAC37167.1|  303|Caenorhabditis elegans homeobox protei...    28   8.5  
L14429-3|AAA28218.1|  305|Caenorhabditis elegans C.elegans homeo...    28   8.5  

>Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical
           protein F56F3.1 protein.
          Length = 761

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 418 YPETDMQSACSALLKNRNGQSVPPPIKSNLR 510
           Y E  +Q A +A ++  NGQ +PP +   LR
Sbjct: 476 YVENQLQEAVNAAIRANNGQQLPPQLHEQLR 506


>U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical
           protein K10B2.2a protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 133 VYVPTDDDRLYIDKKQFPKFNSVLV 207
           VY+PT   R+  DKK FP F  V +
Sbjct: 173 VYIPTLAVRILNDKKNFPNFKGVAI 197


>Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical
           protein R11D1.10a protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 724 PNSICCTNYQFPRAAD*LHSARAVCDIERCKKCV 623
           P+SICCTN +   +     +  + C +  CKKC+
Sbjct: 2   PSSICCTNCRTKYSLLNREAGCSNCALSFCKKCL 35


>Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical
           protein R08A2.5 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 328 VFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPETDMQ 438
           +FS+  ++ +  C  M + +++   P EF+Y  TD Q
Sbjct: 133 LFSLFKSDPVMRCFQMTVLNDSTSSPFEFSYLSTDSQ 169


>Z81070-2|CAB03007.1|  491|Caenorhabditis elegans Hypothetical
           protein F26E4.3 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -1

Query: 652 CDIERCKKCVSTTISSPWWTFPD*NIIKSHCFP 554
           C+  R K C    +   WW      ++  HC+P
Sbjct: 282 CNQHRQKGCEGGYLDRAWWYIRKLGVVGDHCYP 314


>L19249-1|AAC37167.1|  303|Caenorhabditis elegans homeobox protein
           protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 326 AFLACS*PTTCFIATL*SSSMKTPNVPLSLRIPK 427
           A  AC  PT+C  +T  S+ M +PN+P S  IP+
Sbjct: 30  ALQAC--PTSCIPST--STGMLSPNLPFSATIPR 59


>L14429-3|AAA28218.1|  305|Caenorhabditis elegans C.elegans homeobox
           protein 23 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 326 AFLACS*PTTCFIATL*SSSMKTPNVPLSLRIPK 427
           A  AC  PT+C  +T  S+ M +PN+P S  IP+
Sbjct: 32  ALQAC--PTSCIPST--STGMLSPNLPFSATIPR 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,454
Number of Sequences: 27780
Number of extensions: 414913
Number of successful extensions: 1154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)