Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23b22
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   7.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   7.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 241 RSPKKTASATIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNT 372
           R PKK   AT+VY++    +T +G       S+    ++F+  T
Sbjct: 52  RPPKKDGQATVVYFH----VTVMGLDSIDENSMTYAADIFFAQT 91


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 397 KCPIEFTYPETDMQSACSALLKNRNGQSVPPP 492
           K PIEFT    + +     +LK    QS P P
Sbjct: 590 KNPIEFTDLSNERKYEDVCVLKTDTNQSCPSP 621


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 694 IDNLYNKLNWERTRRLMKGD 753
           +DNL  +L  ER  +L +GD
Sbjct: 626 VDNLLGELGGERLLKLAQGD 645


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 43  VCISDRFFAFPHNLVEP 93
           +C+SD  +  PHN   P
Sbjct: 296 LCMSDLHWQLPHNSTNP 312


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 741 KPARSLPIQFVVQIINFLVRQIDYIARGLFAI 646
           KP + +P+Q  +   N +++ I+++ + L AI
Sbjct: 54  KPGKLVPLQCDLSNQNDILKVIEWVEKNLGAI 85


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 63  FCVSSQFGGTAKRRRQQINR 122
           FC     GG++K+R+  + R
Sbjct: 94  FCAEIAHGGSSKKRKSIVER 113


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 545 KSWWKAMTFYYV 580
           K WWK   FY V
Sbjct: 22  KGWWKNAIFYQV 33


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 753 VALHKPARSLPIQFVVQIINFLVRQI 676
           V +  P R L IQ   QI+ F +  I
Sbjct: 276 VVIVSPTRELTIQIWQQIVKFSLNSI 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,721
Number of Sequences: 438
Number of extensions: 4943
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)