Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23b19
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 31 0.72
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 31 0.95
01_01_0965 - 7589659-7589785,7590188-7590317,7590339-7590438,759... 29 3.9
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 29 5.1
07_01_0759 + 5838726-5838879,5839654-5839778,5840168-5840264,584... 28 6.7
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 28 8.9
08_01_0168 - 1385439-1385979,1386081-1387438 28 8.9
>04_04_1312 +
32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 720 TS*NVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 610
T +++L +S +CF YM TSI FI C+
Sbjct: 431 TKIKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 467
>04_04_1311 -
32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 31.1 bits (67), Expect = 0.95
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 708 VSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 610
+++L +S +CF YM TSI FI C+
Sbjct: 409 INILDHEVSERNYVECFKQQGYMNTSIMFIQCA 441
>01_01_0965 -
7589659-7589785,7590188-7590317,7590339-7590438,
7590524-7590643,7590910-7591145,7591585-7591714
Length = 280
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 457 ISGKSNFFIVFRLQILYHILQLVNVWRGRVGGRMNVQS 344
+ G +N F +F L + + LVN WR R+ R N+QS
Sbjct: 190 LEGMTNAFNLFTLTVHLRKMTLVNTWRQRM-LRRNIQS 226
>04_04_1183 - 31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +2
Query: 530 ISTMNFWATFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDT 709
+STM+ WA + ++ Y Y + +E+K + + + FS ++ + +++
Sbjct: 1080 VSTMSLWAIMPLLILFYAAYL-YYQTTSREVKRLDSITRSPVYAQFSEALNGLSTIRAYK 1138
Query: 710 FYD 718
YD
Sbjct: 1139 AYD 1141
>07_01_0759 +
5838726-5838879,5839654-5839778,5840168-5840264,
5840948-5841421,5842017-5842354,5843039-5843197,
5843273-5843311
Length = 461
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -2
Query: 729 SCSTS*NVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQMLNVA 550
SC T+ V L E++ +TLE C D +F + +C Y K +++ N+
Sbjct: 272 SCPTTTLVLDLDETLVHSTLEPCEDADFAFPVYFNFREHTIYVRCRPYLKEFLERVANLF 331
Query: 549 QKFIVEIVQNPY 514
+ I Q+ Y
Sbjct: 332 ETIIFTASQSIY 343
>10_08_0573 +
18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +2
Query: 368 NSPAPDINKLQDMIQD--LQSEYNKKITFTTD--TILENLKNIKDL 493
+ P+PDI+ L+DM D L ++ F T IL+N NIK+L
Sbjct: 568 DDPSPDIHGLKDMPVDIGLLTDLQTLSRFVTSKRNILDNHSNIKEL 613
>08_01_0168 - 1385439-1385979,1386081-1387438
Length = 632
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 690 SISSTTLEKC--FSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQMLNVAQK 544
SI S T E FS++ MT ++D+ S SS+ + TK N++ K
Sbjct: 180 SIVSVTNESLPDFSLNGSMTATVDYNSSSSILSVKLWINDTTKPPYNLSDK 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,523,622
Number of Sequences: 37544
Number of extensions: 378271
Number of successful extensions: 906
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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