Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23b19
         (739 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2235|AAF58027.2| 1630|Drosophila melanogaster CG33017-P...    31   1.6  
AY094935-1|AAM11288.1|  232|Drosophila melanogaster RH54060p pro...    29   6.6  
AE014297-2557|AAF55579.1|  232|Drosophila melanogaster CG7700-PA...    29   6.6  

>AE013599-2235|AAF58027.2| 1630|Drosophila melanogaster CG33017-PB
            protein.
          Length = 1630

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 293  VKTQLCAIQESLNEAISTLNVHAAANSPAP-DINKLQDMIQDLQSEYN 433
            VK +      S N A  T+  HAAANS  P D+N     I  LQ E N
Sbjct: 1362 VKRRTTTRSPSQNAAKRTMETHAAANSKLPFDLNSAAYFICKLQDEGN 1409


>AY094935-1|AAM11288.1|  232|Drosophila melanogaster RH54060p
           protein.
          Length = 232

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 272 VFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNK 436
           VFD L E   Q+     SLNE++S L    AA      + + ++++Q  + E+NK
Sbjct: 55  VFDSLSEEIEQMLEKLSSLNESMSDLPASGAA--AMHTLQRHREILQGYRQEFNK 107


>AE014297-2557|AAF55579.1|  232|Drosophila melanogaster CG7700-PA
           protein.
          Length = 232

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 272 VFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNK 436
           VFD L E   Q+     SLNE++S L    AA      + + ++++Q  + E+NK
Sbjct: 55  VFDSLSEEIEQMLEKLSSLNESMSDLPASGAA--AMHTLQRHREILQGYRQEFNK 107


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,972,725
Number of Sequences: 53049
Number of extensions: 658174
Number of successful extensions: 1531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)