Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23b19
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022975-8|AAB70667.4|  195|Caenorhabditis elegans Hypothetical ...    36   0.040
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AF016430-5|AAB65373.1|  581|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z30662-7|CAA83141.2|  566|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U22831-6|AAK20068.1|  579|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF314195-1|AAK01173.1|  820|Caenorhabditis elegans OSM-5 protein.      29   2.6  
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC006761-7|AAF60551.2|  820|Caenorhabditis elegans Osmotic avoid...    29   2.6  
Z81042-3|CAB02794.2|  660|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    29   3.4  

>AF022975-8|AAB70667.4|  195|Caenorhabditis elegans Hypothetical
           protein K09C6.9 protein.
          Length = 195

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = +2

Query: 278 DPLCEVKTQLCAIQESLNEAISTLNVHAAAN---SPAPDINKLQDMIQDLQSEYNKKITF 448
           DP    K + C I  S+N+AI+ +N+++  N   + +  ++KL     +L      K   
Sbjct: 60  DPELVSKAKTCVINNSMNKAIAAMNLYSGFNGCTNLSDLVSKLATPFINLCKPVINKALS 119

Query: 449 TTDTILENLK---NIKDLMCLNK 508
           T DT   N K   N K   C+NK
Sbjct: 120 TLDTCKANNKQTGNAKQTACMNK 142


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 257 GAQGKVFDPLCEVKTQLCAIQESLNEAISTL-NVHAAANSPAPDIN--KLQDMIQDLQSE 427
           G QGK  D + E+  ++  ++  +++A+  L +        A D N  K   M+QD+Q  
Sbjct: 455 GMQGKDRDSIIELVMEISGVKGIVHDAMKMLKSTEMPELDLAMDANAKKSLQMVQDIQKS 514

Query: 428 YNKK 439
           YN+K
Sbjct: 515 YNRK 518


>AF016430-5|AAB65373.1|  581|Caenorhabditis elegans Hypothetical
           protein C05C8.6 protein.
          Length = 581

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 257 GAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSP 376
           G Q  +FDPL  V  +L   + S+NE    +++ A +N P
Sbjct: 538 GWQELIFDPLPVVYIRLVGTRNSINEVFHVVHLEAPSNVP 577


>Z30662-7|CAA83141.2|  566|Caenorhabditis elegans Hypothetical
           protein T16H12.6 protein.
          Length = 566

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 442 NFFIVFRLQILYHILQLVNVWRGRV 368
           N   +FRL +LYH    V VWR  V
Sbjct: 157 NIIKIFRLALLYHTTLAVRVWRAMV 181


>U22831-6|AAK20068.1|  579|Caenorhabditis elegans Hypothetical
           protein F47D12.7 protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 442 NFFIVFRLQILYHILQLVNVWRGRV 368
           N   +FRL +LYH    V VWR  V
Sbjct: 157 NIIKIFRLALLYHTTLAVRVWRSMV 181


>AF314195-1|AAK01173.1|  820|Caenorhabditis elegans OSM-5 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 290 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKK 439
           +V  QL +I ESL ++   + +++ ANS  P+   +   + DL  +   K
Sbjct: 542 QVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDK 591


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +2

Query: 368 NSPAPDINKLQDMIQDLQSEYNKKITFTTDTILENLKNIKD 490
           N    D+++L + I+ ++S YNK   + +++  +N+K + D
Sbjct: 99  NQLVKDVDELHEEIEKMESLYNKPADYASNSYTDNMKLMLD 139


>AC006761-7|AAF60551.2|  820|Caenorhabditis elegans Osmotic
           avoidance abnormal protein5 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 290 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKK 439
           +V  QL +I ESL ++   + +++ ANS  P+   +   + DL  +   K
Sbjct: 542 QVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDK 591


>Z81042-3|CAB02794.2|  660|Caenorhabditis elegans Hypothetical
           protein C27H6.3 protein.
          Length = 660

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 290 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKKITFTTDTILE 469
           +++ Q+  ++ S+N+ +S         S  P   KL D+    ++E+N    F    I E
Sbjct: 361 QLRNQVYRLESSINQIMSRKCTIRYGTSIMPSFAKLIDVAPPTEAEFNNPCLFPEKRIAE 420

Query: 470 N 472
           N
Sbjct: 421 N 421


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 147 IFMCLVYLNICQITI*IIKNVLKNITFLNRLLATCLW 257
           IF CLV L+   +    + N+L ++   NRL ATC+W
Sbjct: 396 IFTCLVVLSYYGVFFNHLGNILLSV---NRLSATCVW 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,045,556
Number of Sequences: 27780
Number of extensions: 348509
Number of successful extensions: 838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)