Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23b18
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   2.8  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   3.7  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    24   8.6  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    24   8.6  

>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 421 FLLNDKVIYLQNXNKNKLFELSGL 350
           FL   +V+YL + NK + FELS +
Sbjct: 374 FLQQSRVLYLFHANKQRHFELSDI 397


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 319 TVESQTRAGDEIASFLRYC 263
           T+E   +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 116 RYHTQTXKLGLQTPPG*TSHIQXIQEPFIDKP 211
           +Y T T K  L TPP    HI      F   P
Sbjct: 382 QYDTSTSKAELSTPPSKRRHIDDADLVFHSSP 413


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 179 QXIQEPFIDKPPKLQNTLLLTARHSTHPTVAK-ERSDFVACP 301
           Q  + P     P++QNT      H THP   +   SDF + P
Sbjct: 275 QQKKTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIP 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,375
Number of Sequences: 5004
Number of extensions: 24791
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)