Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23b18
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0394 - 17261008-17262476,17262554-17262743                       29   2.1  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     28   2.7  
12_01_0827 - 7662180-7662192,7662451-7662764                           27   4.8  
08_01_0083 - 604175-605776                                             27   8.3  
08_01_0082 - 588269-588434,590800-591653                               27   8.3  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    27   8.3  

>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 311 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 225
           KP    RR   +PS  S VW V LL+V C
Sbjct: 4   KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 214 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 306
           +++EH T  S+  HT  S+   ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


>12_01_0827 - 7662180-7662192,7662451-7662764
          Length = 108

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 212 PKLQNTLLLTARH--STHPTVAKERSDFVACPR 304
           PK Q T++ +AR   +T   + ++RSD  ACPR
Sbjct: 25  PKTQQTVVPSARGPTATDQVLPRQRSDRSACPR 57


>08_01_0083 - 604175-605776
          Length = 533

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTXKLGLQTPPG*TSHI-QXIQEPFIDK 208
           TPAP F R+  +T  + +  P G   HI + ++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTXKLGLQTPPG*TSHI-QXIQEPFIDK 208
           TPAP F R+  +T  + +  P G   HI + ++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +2

Query: 47  LSSPSSFFNRXHIWFDTPAPFFSRYHTQT 133
           LSSPS   +R    FDT  PF  R HTQ+
Sbjct: 626 LSSPSPRHSRAS--FDTAMPFTPRRHTQS 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,473,439
Number of Sequences: 37544
Number of extensions: 171330
Number of successful extensions: 411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)