Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23b18
(426 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical pr... 31 0.35
U41625-5|AAA83327.1| 700|Caenorhabditis elegans Suppressor of a... 28 3.2
AY091467-1|AAM44123.1| 700|Caenorhabditis elegans SUR-5 protein. 28 3.2
Z82278-8|CAB05251.2| 312|Caenorhabditis elegans Hypothetical pr... 27 5.6
AF016416-7|AAB65272.2| 307|Caenorhabditis elegans Hypothetical ... 27 5.6
Z73977-2|CAA98291.2| 349|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z73968-1|CAA98230.2| 349|Caenorhabditis elegans Hypothetical pr... 26 9.8
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p... 26 9.8
U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical pr... 26 9.8
AF039053-16|AAC25869.1| 497|Caenorhabditis elegans Cytochrome p... 26 9.8
>U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical
protein F35D2.3 protein.
Length = 256
Score = 31.1 bits (67), Expect = 0.35
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = -1
Query: 261 GCVECLAVNSSVFCN----FGGLSMNGSWXFCMCEV-YPGGVCN-PSXC 133
G EC + +FCN F G+ G FC+C+V Y G C+ P C
Sbjct: 101 GKCECFERWTGLFCNMRTCFNGIPTGGLDGFCLCDVGYTGPFCDAPLIC 149
>U41625-5|AAA83327.1| 700|Caenorhabditis elegans Suppressor of
activated let-60ras protein 5 protein.
Length = 700
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 170 SHIQXIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDXYKI 328
SH+Q +Q P KPP+ T L+ R+ K+ +D+ R D Y I
Sbjct: 38 SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89
>AY091467-1|AAM44123.1| 700|Caenorhabditis elegans SUR-5 protein.
Length = 700
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 170 SHIQXIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDXYKI 328
SH+Q +Q P KPP+ T L+ R+ K+ +D+ R D Y I
Sbjct: 38 SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89
>Z82278-8|CAB05251.2| 312|Caenorhabditis elegans Hypothetical
protein M162.8 protein.
Length = 312
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 QNTLLLTARHSTHPTVAKERSDFVACPRLAFDXYKIXSARF 343
+N +L+ ++ + + DF+A P+L D ++I +A F
Sbjct: 99 KNPVLMRISRNSLNEILRVLEDFLAIPKLEIDHFRIKAAMF 139
>AF016416-7|AAB65272.2| 307|Caenorhabditis elegans Hypothetical
protein F29A7.2 protein.
Length = 307
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 244 QTFHTSDSSEGTKRFRRLPSFGFRXLQNRVCKILN 348
++ TSDS G KR FGFR + + ++ N
Sbjct: 78 ESVQTSDSEHGIKRVWLKEGFGFRDWIDHILEVFN 112
>Z73977-2|CAA98291.2| 349|Caenorhabditis elegans Hypothetical
protein C05A2.1 protein.
Length = 349
Score = 26.2 bits (55), Expect = 9.8
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -1
Query: 411 MIKLFIYKTVIKINYLSLAGL--V*NLADXIL*XSKAKRGQATKSLRSFATV-GCVECLA 241
++ L YK N+ L G V NL + KR + K + F V C+ A
Sbjct: 109 IVLLLCYKIKYPNNFFLLRGNHEVANLNRIYGFYDECKRRYSVKLWKCFQDVFNCMPVAA 168
Query: 240 -VNSSVFCNFGGLSMN 196
+++ +FC GGLS N
Sbjct: 169 LIDNKIFCCHGGLSPN 184
>Z73968-1|CAA98230.2| 349|Caenorhabditis elegans Hypothetical
protein C05A2.1 protein.
Length = 349
Score = 26.2 bits (55), Expect = 9.8
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -1
Query: 411 MIKLFIYKTVIKINYLSLAGL--V*NLADXIL*XSKAKRGQATKSLRSFATV-GCVECLA 241
++ L YK N+ L G V NL + KR + K + F V C+ A
Sbjct: 109 IVLLLCYKIKYPNNFFLLRGNHEVANLNRIYGFYDECKRRYSVKLWKCFQDVFNCMPVAA 168
Query: 240 -VNSSVFCNFGGLSMN 196
+++ +FC GGLS N
Sbjct: 169 LIDNKIFCCHGGLSPN 184
>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
protein B0222.9 protein.
Length = 1217
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 216 FGGLSMNGSWXFCMCEV 166
FGG N SW CMC +
Sbjct: 708 FGGKVNNASWIACMCAI 724
>U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical
protein C49H3.3 protein.
Length = 109
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 178 TEXPGAVH*QAAEVTEHATINSQTFHTSDSS 270
T+ G + + EVT ATIN++T D S
Sbjct: 47 TKTDGTANEEKMEVTSQATINTKTLKKKDGS 77
>AF039053-16|AAC25869.1| 497|Caenorhabditis elegans Cytochrome p450
family protein 33C1 protein.
Length = 497
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 32 QFKHGLSSPSSFFNRXHIWFDTPAPFFSR 118
+ KH + SP+ F + HI+ P F++
Sbjct: 195 ELKHIIDSPAEIFGKLHIFLAMNIPIFAK 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,264,633
Number of Sequences: 27780
Number of extensions: 152315
Number of successful extensions: 352
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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