Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23b16
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 187 1e-48
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 62 1e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 46 6e-06
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 34 0.025
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.2
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 27 2.9
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 27 2.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.9
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 3.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 3.8
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 5.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.6
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 8.7
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 8.7
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 187 bits (456), Expect = 1e-48
Identities = 94/128 (73%), Positives = 106/128 (82%), Gaps = 1/128 (0%)
Frame = +1
Query: 304 DNLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIP 480
D+LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+GSPI IP
Sbjct: 73 DSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIP 132
Query: 481 VGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 660
VG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIKVVDLLAP
Sbjct: 133 VGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAP 192
Query: 661 YAKGGKIG 684
YA+GGKIG
Sbjct: 193 YARGGKIG 200
Score = 34.7 bits (76), Expect = 0.014
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 647 ICSLLMPKVE--RLGLFGGAGVGKTVLIME 730
+ LL P ++GLFGGAGVGKTV I E
Sbjct: 186 VVDLLAPYARGGKIGLFGGAGVGKTVFIQE 215
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +1
Query: 370 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 546
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 547 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKG 672
I T + + +AP + + E + TG+K +D + P +G
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRG 190
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 46.0 bits (104), Expect = 6e-06
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Frame = +1
Query: 361 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 537
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 538 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKI 681
+ + I+ +E++ TGI +D L A+G KI
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQKI 166
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.9 bits (74), Expect = 0.025
Identities = 27/106 (25%), Positives = 44/106 (41%)
Frame = -3
Query: 683 PIFPPLA*GASRSTTFIPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMM 504
PI P +++ +P T SC T S +G S+ ++ ++ + P S+ + I +
Sbjct: 206 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPP 265
Query: 503 RPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCCATS 366
S T P +ST C T S+P T +P TS
Sbjct: 266 TSTSSTDTN-SSPLPTTSTSC-TTSTSIPPTGNSTTPVTPTVPPTS 309
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 545 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 411
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 726 IINTVLPTPAPPNKPNLSTFGIRSEQIDDFYTSYENL 616
I +L PN+P++ FGI + Y +++NL
Sbjct: 291 IAKKILENSPCPNQPSIQPFGILMMLVSTIYGNFKNL 327
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 562 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGFVWRSWCGQNCI 720
T + A P +++ Q +L TG +V+D L P +GG CG+ I
Sbjct: 216 TWPVRAARPVADNLTANQPLL-TGQRVLDALYPCVQGGTTAIPGAFGCGKTVI 267
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 421 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 537
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 735 SVSIINTVLPTPAPPNKPNLSTFGIRSEQIDDFYTSYENLL 613
S SI + LPTP+ P+LS +S I + TS N+L
Sbjct: 3786 SSSIRDAELPTPSRMTSPSLSETIPQSSSISEASTSNPNIL 3826
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 3.8
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +1
Query: 352 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 531
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 532 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 666
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 96 LVERQQSRIELVTKITNSLRNDPSSAD 16
LVER SR+E+V + +SL N + AD
Sbjct: 889 LVERANSRVEVVHERLSSLENQVTIAD 915
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 331 GHLGSAASCLQTEHPLRHQ*RQLP 260
G GSA SCL H L H +Q P
Sbjct: 140 GFAGSAISCLVWAHQLLHPNKQFP 163
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 551 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 408
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 485 PTGIRMGEPESSTGCPRTKPSVPSMAMV 402
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 212 TAAPVTSDAFSVALFTTVFVAKRPTLQT 129
T + VTS+A S A V +K+P L+T
Sbjct: 521 TESAVTSEALSAARLEAVKASKKPPLRT 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,460
Number of Sequences: 5004
Number of extensions: 71714
Number of successful extensions: 224
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -