Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23b16
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 50 2e-06
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 41 0.001
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 31 0.98
08_01_0789 + 7640021-7640382,7643435-7643480,7644514-7644638,764... 31 1.3
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 30 1.7
11_06_0693 - 26334574-26336121 30 1.7
03_02_0325 - 7467862-7468054,7468668-7468752,7469124-7469290,747... 30 1.7
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 30 2.3
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 3.0
04_03_1017 + 21747044-21748051 29 5.2
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 29 5.2
10_08_0685 - 19875801-19875980,19876074-19876277,19876392-198767... 28 6.9
06_02_0179 + 12668623-12669591 28 6.9
06_02_0176 + 12637287-12637376,12638108-12638280,12638631-126387... 28 6.9
01_05_0159 + 18716055-18716272,18716900-18718529,18718622-187186... 28 6.9
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 28 9.1
08_01_0996 + 10089800-10090149,10090426-10090483,10092922-100931... 28 9.1
02_05_0504 - 29590852-29591862 28 9.1
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 385 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 561
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 163
Query: 562 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKI 681
I + + + +E++ TGI +D++ A+G KI
Sbjct: 164 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 203
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 41.1 bits (92), Expect = 0.001
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Frame = +1
Query: 385 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 561
GE V + +GT G+ + +G ++ PV + LGR+ N G+PID PI +
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEA 123
Query: 562 TAAI------HAEAPEFVDMSVQ---QEILVTGIKVVDLLAPYAKGGKI 681
I A A ++ S + +E++ TGI +D++ A+G KI
Sbjct: 124 YLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 172
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -3
Query: 461 PESSTGCPRTKPSVPSMAMVRTVFSPKCCATSKTKRGDRFCTSRAFR 321
P ++ G PR PS P + PKC + G FCT F+
Sbjct: 868 PGATAGRPRLSPSDPEVVGTEAE-CPKCAQLKLLREGAAFCTQDCFK 913
>08_01_0789 +
7640021-7640382,7643435-7643480,7644514-7644638,
7645028-7645092,7647642-7648186
Length = 380
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 696 PPNKPNLSTFGIRSEQIDDFYTSYENLLLHRHVDKLWSFGMDSSSLVGWDGT 541
P NK NL +I++ +S L+LH + W +D S VGW+ +
Sbjct: 118 PSNKNNLKKLYDDHFRIEEAKSSNFMLILHHQIVNRWMNALDRFSDVGWNNS 169
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 527 GSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMV 402
GSP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>11_06_0693 - 26334574-26336121
Length = 515
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1
Query: 667 WHKERADRRLLYQLRESPAAQTCRQTLEL 581
WH A+RRLL+ L SP A+ R+ LEL
Sbjct: 20 WHPRTAERRLLHLLHHSPPAR--RRPLEL 46
>03_02_0325 -
7467862-7468054,7468668-7468752,7469124-7469290,
7470130-7471133
Length = 482
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -2
Query: 519 DYIDDASEGFSSHRDTNG*ARVEYGLPTD*AFSTVHGNGTYSVLSQVLRHLQDQAGRSI 343
D+ DD +EG + +D +G A + YGL TV G +VL+Q+ + L++ S+
Sbjct: 171 DHEDDDAEGAEAEKDADGEAALSYGL-------TVASKGQEAVLAQLDKVLEEYTTFSV 222
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 428 PSVPSMAMVRTVFSPKCCATSK 363
P+ PS A VR SP+CC+ S+
Sbjct: 3 PTAPSPASVRAAASPRCCSRSR 24
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 406 IAMDGTEGLVRGQPVLDSGSPIRIPVGAE-TLGRIINVIGEPIDERGPI 549
I D E + P S S +P AE L I NV+GE +D+ GP+
Sbjct: 128 IVPDSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGPV 176
>04_03_1017 + 21747044-21748051
Length = 335
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 491 SAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCCATSKTKRGDRFCTSRAFRIGG 312
S P R P+ + P + P +PS A TV P+ + R C+SRA R+ G
Sbjct: 266 STPPPPRAASPDYTPSTPPSSP-LPSAAESFTVPPPRRYHPYQRSRSGGACSSRAIRVIG 324
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 647 STTFIPVTRISCC--TDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGI 474
S+ F+P+ +S TD++T SGA +W VL + IG + + RV +
Sbjct: 152 SSLFLPLYFVSSGLKTDVTTISGAKSWGLLVLVMTTACAGKIGGTVAASLLMRVPLREAL 211
Query: 473 RMG 465
+G
Sbjct: 212 ALG 214
>10_08_0685 -
19875801-19875980,19876074-19876277,19876392-19876724,
19876834-19877115,19877210-19877425,19879752-19880024
Length = 495
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 627 YENLLLHRHVDKLWS--FGMDSSSLVGWDGTALVNRFADYIDDASE 496
++ L+L +D +++ FG D ++L DG+ +RFA DDASE
Sbjct: 162 FQGLMLRATMDSIFTIAFGTDLNTL---DGSGEGSRFAAAFDDASE 204
>06_02_0179 + 12668623-12669591
Length = 322
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 732 VSIINTVLPTPAPPNKPNLSTF 667
+S+ TVLP PAPP+ L+ F
Sbjct: 174 LSLTGTVLPPPAPPSASGLTVF 195
>06_02_0176 +
12637287-12637376,12638108-12638280,12638631-12638743,
12639125-12639313,12639397-12639464,12639601-12639684,
12639791-12639844,12640445-12640525,12640615-12640708,
12640830-12640903,12640976-12641086,12641299-12641355,
12641458-12641562,12641656-12641772,12641900-12642003,
12642229-12642394,12642513-12642641
Length = 602
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 549 PNRQDCCYPCRSSRVCRHVCAAGDSRNWYKSRRSARSLCQRWK 677
P++ DC Y VC H+ AAG + + + RS +WK
Sbjct: 422 PSKFDCDYAYVLGHVCYHILAAG-LNGYMATVTNLRSPVNKWK 463
>01_05_0159 +
18716055-18716272,18716900-18718529,18718622-18718693,
18718800-18719213
Length = 777
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 519 DYIDDASEGFSSHRDTNG*ARVEYGL 442
DY+D A +G S H+ G + YGL
Sbjct: 177 DYVDPADQGSSDHKSIKGSLNLFYGL 202
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 485 PTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSP 384
P G++ P ++ GC P +P M + R V P
Sbjct: 40 PVGVQAAFPHAAAGCAPPPPVMPVMIVYRVVQPP 73
>08_01_0996 +
10089800-10090149,10090426-10090483,10092922-10093126,
10093201-10093280,10093377-10093477,10093566-10093691,
10094099-10094101,10094736-10094763,10094875-10094961,
10095187-10095273,10095346-10095411,10095511-10095603,
10095688-10095744,10095834-10095959,10096049-10096139,
10096233-10096321,10096951-10097141,10097224-10097322,
10098814-10098829
Length = 650
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 671 VERLGLFGGAGVGKTVLI-METDQQCC 748
V+ L ++GG G GKT+L+ + +Q CC
Sbjct: 283 VQGLYMYGGVGTGKTMLMDLFYEQLCC 309
>02_05_0504 - 29590852-29591862
Length = 336
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 732 VSIINTVLPTPAPPNKPNLSTF 667
+S+ TVLP PAPP L+ F
Sbjct: 190 LSLTGTVLPPPAPPGASGLTVF 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,728,932
Number of Sequences: 37544
Number of extensions: 513929
Number of successful extensions: 1690
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1689
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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