Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23b05
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61...    29   4.6  
05_05_0272 - 23738514-23738817,23739382-23740748                       29   4.6  
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959     29   4.6  
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482...    28   6.1  
02_04_0134 - 20109610-20109984                                         28   6.1  

>12_01_0072 +
           609254-609722,610355-610421,610652-610745,610984-611127
          Length = 257

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 164 STGTAARANCCAF*TSVPTDRCCSATADTIGPMAQSLFLMCTT 292
           S  TAA + C A  +  P  +  SAT +T  P +    L C++
Sbjct: 57  SDTTAAASTCSASPSHTPVSKPSSATGETAAPQSNLCALRCSS 99


>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 355 QVVDKRPRRSLDSPRLDGYVLASSPIPHTDWN-EELKLY 468
           +++ + P +S+DS  LDGY   +  +    W+ EE K Y
Sbjct: 432 EIIFENPEKSMDSVHLDGYAFFAVGMGPGKWSAEERKTY 470


>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
          Length = 395

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 26  SRRHRFYK-NICGVIKWCSTCTTTAIMWK 109
           +RRH F + ++CGV+ +CS     A+ WK
Sbjct: 334 TRRHEFRRCSVCGVVNYCSR-ACQALHWK 361


>06_03_1507 -
           30646168-30646254,30646350-30646490,30648109-30648202,
           30648445-30648509,30648934-30649176,30649442-30649499,
           30649957-30650037,30650323-30650533,30650975-30651141,
           30651216-30651268,30651600-30651681,30651765-30651914,
           30652027-30652111,30652189-30652393,30652502-30652573,
           30652911-30653456
          Length = 779

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 310 STTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLA-----SSPIPHT 441
           S+T+ RT SS    +    KRPRR   +P  D  VLA       P PHT
Sbjct: 38  SSTLGRTRSSSSASATPNSKRPRRPPCTPESDPPVLALRAHTPDPDPHT 86


>02_04_0134 - 20109610-20109984
          Length = 124

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 180 HAQTAARFKQACLQTGVAVQRQILLARWHKVC 275
           +A + A  +QAC + G A Q + L  RW K C
Sbjct: 14  NAASRAERRQACSEQGAAKQARRLERRWAKQC 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,443
Number of Sequences: 37544
Number of extensions: 278834
Number of successful extensions: 814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)